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Mutant Information

Mutant Name	FN1679-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1679-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	174845	G-A	HET
SBS	Chr1	16181107	A-G	HET
SBS	Chr1	17054878	A-G	Homo
SBS	Chr2	26419856	A-G	HET
SBS	Chr3	27909180	C-T	HET
SBS	Chr4	5822614	T-C	Homo
SBS	Chr4	23304507	C-A	Homo
SBS	Chr5	7397978	T-C	Homo
SBS	Chr5	10729452	G-A	Homo
SBS	Chr5	12508210	C-A	HET
SBS	Chr5	16008844	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g27520
SBS	Chr5	23493360	G-T	Homo
SBS	Chr5	28785601	A-T	Homo
SBS	Chr6	21700344	T-C	Homo
SBS	Chr7	8585143	A-C	Homo
SBS	Chr7	14347612	G-C	Homo
SBS	Chr7	22804080	T-A	HET
SBS	Chr7	26539910	G-A	HET
SBS	Chr7	26539916	C-A	HET
SBS	Chr7	27673686	G-A	HET
SBS	Chr8	10866412	T-C	HET
SBS	Chr8	18526655	C-T	Homo
SBS	Chr8	19947571	G-A	HET
SBS	Chr9	12522160	G-A	HET
SBS	Chr9	17866125	A-C	HET
SBS	Chr10	3758576	A-T	Homo
SBS	Chr10	6406642	G-C	Homo
SBS	Chr11	16012961	A-C	Homo
SBS	Chr11	23101178	G-A	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1660892	1660900	8
Deletion	Chr9	3835582	3835585	3
Deletion	Chr1	8276449	8276457	8
Deletion	Chr6	12447510	12447520	10
Deletion	Chr4	12800001	12886000	85999	11
Deletion	Chr3	14574457	14574477	20
Deletion	Chr12	14785741	14785742	1	LOC_Os12g25550
Deletion	Chr2	15153001	15189000	35999	4
Deletion	Chr11	16360904	16360914	10
Deletion	Chr3	18497510	18497517	7
Deletion	Chr10	19043169	19043175	6
Deletion	Chr9	19479611	19479612	1
Deletion	Chr6	19630922	19630928	6
Deletion	Chr2	21009364	21009370	6
Deletion	Chr11	22479923	22479928	5
Deletion	Chr7	23377643	23377645	2
Deletion	Chr3	23762801	23762824	23
Deletion	Chr2	23925598	23925601	3
Deletion	Chr8	25972874	25972890	16	LOC_Os08g41090
Deletion	Chr7	26655546	26655562	16
Deletion	Chr1	40022824	40022828	4	LOC_Os01g68870

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	31582346	31582347	2

Inversions: 31

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	590292	590599
Inversion	Chr12	3828054	3828247
Inversion	Chr6	4866414	4866697
Inversion	Chr1	5362871	5363107
Inversion	Chr10	5516391	5516638	LOC_Os10g10100
Inversion	Chr6	5760745	5761118	LOC_Os06g11010
Inversion	Chr3	8076092	8076696
Inversion	Chr6	9496312	9496555	LOC_Os06g16560
Inversion	Chr7	10209382	10209577
Inversion	Chr6	10766144	10766306	LOC_Os06g18940
Inversion	Chr1	11906510	11906765	LOC_Os01g21310
Inversion	Chr3	13190752	13191168
Inversion	Chr11	14569106	14569420	LOC_Os11g25560
Inversion	Chr7	14989225	14989488	LOC_Os07g26110
Inversion	Chr10	18657719	18657985	LOC_Os10g34940
Inversion	Chr5	19366859	19366989	LOC_Os05g33040
Inversion	Chr5	20767939	20768047
Inversion	Chr12	22071692	22071881
Inversion	Chr2	22452845	22453058	LOC_Os02g37140
Inversion	Chr1	24703559	24703736
Inversion	Chr6	24996954	24997321	LOC_Os06g41710
Inversion	Chr3	25245278	25245570
Inversion	Chr7	26784244	26784448	LOC_Os07g44860
Inversion	Chr2	27396098	27396462
Inversion	Chr8	27648249	27648639
Inversion	Chr4	28294103	28294393	LOC_Os04g47690
Inversion	Chr7	28738941	28739198	LOC_Os07g48120
Inversion	Chr2	30320568	30320833
Inversion	Chr2	32150172	32150400	LOC_Os02g52540
Inversion	Chr4	32853480	32853845
Inversion	Chr1	34189590	34189771

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	12800477	Chr1	30398590	LOC_Os04g22600
Translocation	Chr4	12801588	Chr1	30413013	2
Translocation	Chr8	13370121	Chr4	2808015
Translocation	Chr7	17709928	Chr1	30990138

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