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Mutant Information

Mutant Name	FN1681-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1681-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 13

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30731820	C-T	Homo
SBS	Chr10	22014883	C-A	Homo
SBS	Chr3	20440096	C-T	Homo
SBS	Chr3	21813942	C-T	Homo
SBS	Chr3	7796573	T-A	Homo
SBS	Chr4	13564858	G-A	Homo
SBS	Chr4	19777305	T-C	Homo
SBS	Chr5	818597	A-T	Homo
SBS	Chr5	8468542	C-G	Homo
SBS	Chr6	13992667	C-A	HET
SBS	Chr6	1721917	T-C	Homo
SBS	Chr6	25334967	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr9	16905094	A-T	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2243001	2286000	42999	5
Deletion	Chr6	6964017	6964021	4
Deletion	Chr5	9025758	9025760	2
Deletion	Chr8	11181878	11181879	1	LOC_Os08g18730
Deletion	Chr11	11625001	11646000	20999	3
Deletion	Chr10	12601676	12601677	1
Deletion	Chr7	14559916	14559920	4
Deletion	Chr8	14721641	14721646	5
Deletion	Chr8	21430106	21430130	24
Deletion	Chr11	21780483	21780495	12	LOC_Os11g36920
Deletion	Chr10	22974931	22974946	15
Deletion	Chr3	29057001	29206000	148999	19

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	216802	216803	2
Insertion	Chr10	18026780	18026783	4
Insertion	Chr6	24860355	24860355	1
Insertion	Chr8	17058883	17058883	1

Inversions: 135

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	743182	743322	LOC_Os01g02350
Inversion	Chr10	838121	838451	LOC_Os10g02340
Inversion	Chr3	1161440	1161857
Inversion	Chr9	1341885	1342081	LOC_Os09g02860
Inversion	Chr8	1365042	1365369	LOC_Os08g03040
Inversion	Chr12	1437552	1437816	LOC_Os12g03594
Inversion	Chr6	1471861	1472190	LOC_Os06g03720
Inversion	Chr7	1784322	1784575	LOC_Os07g04170
Inversion	Chr2	1798919	1799210
Inversion	Chr12	1863821	1864091
Inversion	Chr2	2014093	2014340	LOC_Os02g04530
Inversion	Chr12	2084375	2084549	LOC_Os12g04840
Inversion	Chr11	2254772	2254943	LOC_Os11g05130
Inversion	Chr4	2386253	2386405
Inversion	Chr12	2585937	2586248	LOC_Os12g05620
Inversion	Chr4	2706290	2706473	LOC_Os04g05400
Inversion	Chr3	2748229	2748444	LOC_Os03g05530
Inversion	Chr1	3181121	3181444
Inversion	Chr8	3413595	3413781
Inversion	Chr1	3551029	3551238	2
Inversion	Chr5	3778361	3778757
Inversion	Chr1	4160558	4160909
Inversion	Chr3	4209546	4210027	LOC_Os03g08270
Inversion	Chr1	4245361	4245820	2
Inversion	Chr5	4448639	4448801	LOC_Os05g08160
Inversion	Chr6	4968669	4968924	LOC_Os06g09750
Inversion	Chr8	5065313	5065561
Inversion	Chr3	5260054	5260178
Inversion	Chr3	5542003	5542105
Inversion	Chr3	5747480	5748054	LOC_Os03g11150
Inversion	Chr11	5797435	5797628	LOC_Os11g10570
Inversion	Chr4	5826656	5827073	LOC_Os04g10720
Inversion	Chr2	6073594	6073940	LOC_Os02g11760
Inversion	Chr7	6376004	6376231
Inversion	Chr10	6491200	6491489
Inversion	Chr3	6712509	6712618
Inversion	Chr12	7501383	7501772
Inversion	Chr3	7716346	7716476
Inversion	Chr9	9337206	9337369
Inversion	Chr7	9369276	9369483	LOC_Os07g16070
Inversion	Chr8	9501784	9502040
Inversion	Chr9	9914983	9915136	LOC_Os09g16240
Inversion	Chr10	9994992	9995181	LOC_Os10g19930
Inversion	Chr4	10597445	10965151	LOC_Os04g19090
Inversion	Chr2	10813739	10814144
Inversion	Chr1	10872701	10872844	LOC_Os01g19220
Inversion	Chr11	11138847	11138964
Inversion	Chr11	11252026	11252323	LOC_Os11g19520
Inversion	Chr10	11836193	11836418	LOC_Os10g22770
Inversion	Chr5	12088756	12088950
Inversion	Chr3	12271034	12271176
Inversion	Chr6	12695561	12695892
Inversion	Chr3	12945703	12945812	LOC_Os03g22540
Inversion	Chr2	14001587	14001759	LOC_Os02g24170
Inversion	Chr11	14274426	14274570	LOC_Os11g25050
Inversion	Chr7	14614396	14614802
Inversion	Chr10	14780579	14781014
Inversion	Chr11	14780780	14780978
Inversion	Chr11	14793715	14793977	LOC_Os11g25930
Inversion	Chr2	15059225	15059343	LOC_Os02g25720
Inversion	Chr8	15389492	15389815
Inversion	Chr2	15737735	15738143
Inversion	Chr1	16329171	16329358
Inversion	Chr9	16462000	16462239	LOC_Os09g27060
Inversion	Chr3	16628827	16629178	LOC_Os03g29240
Inversion	Chr12	16971351	16971487
Inversion	Chr9	17037305	17037595
Inversion	Chr12	17902543	17903047	LOC_Os12g29950
Inversion	Chr5	18072585	18072788
Inversion	Chr1	18243513	18243980	LOC_Os01g33136
Inversion	Chr7	19124745	19124992
Inversion	Chr12	19723045	19723191
Inversion	Chr3	20047930	20048266
Inversion	Chr6	20108531	20108788	LOC_Os06g34570
Inversion	Chr5	20360108	20539104	2
Inversion	Chr5	20360116	20539104	2
Inversion	Chr5	20932893	20933002	LOC_Os05g35230
Inversion	Chr6	21044107	21044426
Inversion	Chr10	21173957	21174165	LOC_Os10g39620
Inversion	Chr1	21189559	21189946	LOC_Os01g37860
Inversion	Chr4	21253403	21253717
Inversion	Chr10	21602933	21603110	LOC_Os10g40324
Inversion	Chr12	22350509	22350869	LOC_Os12g36510
Inversion	Chr9	22505510	22505637	LOC_Os09g39180
Inversion	Chr2	22558384	22558705
Inversion	Chr2	22655481	22655639	2
Inversion	Chr6	23334648	23334828	LOC_Os06g39330
Inversion	Chr5	23764980	23765126
Inversion	Chr3	24022727	24023275	LOC_Os03g43060
Inversion	Chr12	24521150	24521299	LOC_Os12g39700
Inversion	Chr5	24638997	24639191
Inversion	Chr2	24687304	24687886	LOC_Os02g40720
Inversion	Chr2	24750714	24750858	LOC_Os02g40840
Inversion	Chr12	25358511	25358828	LOC_Os12g40950
Inversion	Chr6	25385692	25386094
Inversion	Chr2	25424030	25424426	LOC_Os02g42280
Inversion	Chr7	25659266	25659447	LOC_Os07g42834
Inversion	Chr7	25712487	25712612
Inversion	Chr1	25988547	25988749
Inversion	Chr5	26172813	26173159
Inversion	Chr12	26213432	26213711
Inversion	Chr7	26301468	26301918	LOC_Os07g44000
Inversion	Chr8	26515541	26515721
Inversion	Chr11	26706957	26707418
Inversion	Chr11	26723783	26724075	2
Inversion	Chr3	26756738	26757287
Inversion	Chr6	26785600	26785779	LOC_Os06g44380
Inversion	Chr8	26987114	26987621
Inversion	Chr3	27526555	27526744	LOC_Os03g48330
Inversion	Chr3	27709226	27709365	LOC_Os03g48600
Inversion	Chr5	28443591	28443898	LOC_Os05g49580
Inversion	Chr6	28516933	28517176
Inversion	Chr1	28924396	28924532	2
Inversion	Chr4	29208271	29208465	LOC_Os04g48980
Inversion	Chr3	29659055	29659229
Inversion	Chr4	29876530	29876987
Inversion	Chr2	29948145	29948430	LOC_Os02g48980
Inversion	Chr6	30158123	30158279
Inversion	Chr3	30269940	30270102	LOC_Os03g52794
Inversion	Chr3	31021183	31021617	LOC_Os03g54114
Inversion	Chr2	31225927	31226030
Inversion	Chr3	31400658	31401011	LOC_Os03g55180
Inversion	Chr1	32119784	32119982
Inversion	Chr4	32254473	32254793	LOC_Os04g54140
Inversion	Chr2	32284815	32285028	LOC_Os02g52800
Inversion	Chr4	32798715	32798851
Inversion	Chr2	33386986	33387165	LOC_Os02g54510
Inversion	Chr4	33441828	33442050
Inversion	Chr1	34936798	34937054
Inversion	Chr4	34973316	34973735
Inversion	Chr4	35107746	35108042
Inversion	Chr2	35498477	35498662	LOC_Os02g57960
Inversion	Chr1	36965842	36966095
Inversion	Chr1	37094407	37094676
Inversion	Chr1	39564883	39565079	LOC_Os01g68050

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3773762	Chr2	15357418	LOC_Os06g07780
Translocation	Chr4	7546307	Chr1	2551414	2
Translocation	Chr10	8097515	Chr1	16931702
Translocation	Chr7	22644370	Chr6	3770448	2

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