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Mutant Information

Mutant Name	FN1684-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1684-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14704418	C-T	HET
SBS	Chr1	23831281	C-A	Homo
SBS	Chr11	23686632	G-A	HET
SBS	Chr12	25261065	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g40810
SBS	Chr2	20219669	C-G	Homo
SBS	Chr2	29665276	G-A	HET
SBS	Chr2	30171544	G-T	HET
SBS	Chr3	3670556	A-T	HET
SBS	Chr3	4118953	G-A	HET
SBS	Chr4	16980654	G-A	Homo
SBS	Chr4	20628290	G-T	Homo
SBS	Chr4	714545	C-T	HET
SBS	Chr4	7237537	C-T	HET
SBS	Chr5	3708097	T-A	Homo
SBS	Chr5	8408972	G-T	HET
SBS	Chr5	8408973	A-T	HET
SBS	Chr6	22872651	C-T	HET
SBS	Chr6	27963151	A-C	Homo
SBS	Chr6	27963152	G-T	Homo
SBS	Chr7	8507019	C-T	Homo
SBS	Chr8	8809525	G-C	Homo
SBS	Chr9	11264984	A-G	HET
SBS	Chr9	2363449	G-T	Homo

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4185045	4185049	4
Deletion	Chr3	4579949	4579960	11
Deletion	Chr7	4886149	4886153	4	LOC_Os07g09320
Deletion	Chr10	5749001	5938000	188999	25
Deletion	Chr10	5948001	5980000	31999	6
Deletion	Chr10	5990001	6132000	141999	21
Deletion	Chr3	6172544	6172555	11	LOC_Os03g11790
Deletion	Chr5	6329356	6329359	3
Deletion	Chr9	11337999	11338125	126
Deletion	Chr12	13064502	13064516	14	LOC_Os12g23100
Deletion	Chr5	14097629	14097630	1	LOC_Os05g24380
Deletion	Chr12	14160001	14206000	45999	5
Deletion	Chr1	14628001	14667000	38999	2
Deletion	Chr4	15370844	15370845	1
Deletion	Chr2	17297185	17297188	3
Deletion	Chr3	19563243	19563398	155
Deletion	Chr2	20219693	20219702	9
Deletion	Chr3	27152164	27152167	3
Deletion	Chr3	29371999	29372000	1	LOC_Os03g51330

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	8170442	8170447	6
Insertion	Chr9	14934536	14934537	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7651033	7651307	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2364332	Chr1	2608429	2
Translocation	Chr9	2366161	Chr1	2608433	2
Translocation	Chr10	6065356	Chr8	17058294
Translocation	Chr12	22623003	Chr11	22169200	2

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