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Mutant Information

Mutant Name	FN1686-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1686-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11113743	T-C	Homo
SBS	Chr1	24830824	G-A	HET
SBS	Chr2	5604034	G-A	HET
SBS	Chr2	15923141	T-A	HET
SBS	Chr2	28969382	C-A	Homo
SBS	Chr2	30918847	T-C	Homo
SBS	Chr2	32437411	C-T	Homo
SBS	Chr3	11897644	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g20970
SBS	Chr4	10416415	G-C	HET
SBS	Chr4	14319894	A-T	HET
SBS	Chr4	23746182	C-T	HET
SBS	Chr4	31939684	C-T	HET
SBS	Chr4	33997299	G-T	HET
SBS	Chr5	21929367	A-T	Homo
SBS	Chr5	21929368	A-T	Homo
SBS	Chr5	21929379	C-T	Homo
SBS	Chr5	23707047	G-T	Homo
SBS	Chr6	15041005	C-A	Homo
SBS	Chr6	20564015	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g35270
SBS	Chr7	794170	C-A	HET
SBS	Chr7	3852334	T-G	HET
SBS	Chr7	11155021	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g18840
SBS	Chr7	12986790	G-C	HET
SBS	Chr7	13632673	C-T	HET
SBS	Chr8	2629601	A-T	Homo
SBS	Chr8	6551618	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11150
SBS	Chr8	28220186	G-T	HET
SBS	Chr8	28220187	C-T	HET
SBS	Chr10	13007890	G-T	HET
SBS	Chr10	15157922	G-T	HET
SBS	Chr11	641217	C-T	HET
SBS	Chr11	24846925	T-A	HET
SBS	Chr12	11694756	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g20110
SBS	Chr12	13335636	T-A	HET
SBS	Chr12	21567611	C-T	HET
SBS	Chr12	24044074	G-A	Homo

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	762571	762572	1
Deletion	Chr11	1139840	1139844	4
Deletion	Chr2	1276435	1276437	2
Deletion	Chr3	2107204	2107209	5
Deletion	Chr1	3029062	3029067	5
Deletion	Chr1	3951643	3951645	2
Deletion	Chr10	4782290	4782298	8
Deletion	Chr3	7943427	7943428	1
Deletion	Chr1	8502717	8502745	28
Deletion	Chr10	10640033	10640043	10	LOC_Os10g21000
Deletion	Chr7	10811001	11140000	328999	53
Deletion	Chr7	11401001	11548000	146999	23
Deletion	Chr10	11434887	11434888	1
Deletion	Chr3	17126874	17126893	19
Deletion	Chr3	17220001	17224000	3999	2
Deletion	Chr8	18906559	18906560	1	LOC_Os08g30670
Deletion	Chr5	21925318	21925321	3
Deletion	Chr3	23771650	23771654	4
Deletion	Chr11	27182187	27182197	10
Deletion	Chr5	29678001	29804000	125999	19
Deletion	Chr5	29892001	29901000	8999	2
Deletion	Chr2	31184821	31184823	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	22732809	22732810	2
Insertion	Chr1	17442466	17442470	5
Insertion	Chr5	15014899	15014899	1
Insertion	Chr5	17145918	17145918	1
Insertion	Chr7	1308316	1308321	6

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2492686	2493096
Inversion	Chr1	4539256	4539397	LOC_Os01g09020
Inversion	Chr2	5262883	5263368	LOC_Os02g10100
Inversion	Chr4	11014444	11341741
Inversion	Chr4	16522544	16522747
Inversion	Chr6	17191751	17192059
Inversion	Chr1	24487615	24528653	LOC_Os01g42990
Inversion	Chr1	24487616	24528655	LOC_Os01g42990
Inversion	Chr1	38228430	38237042	2
Inversion	Chr1	38228435	38237049	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13220780	Chr5	29713108
Translocation	Chr5	23219934	Chr3	25528108	2

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