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Mutant Information

Mutant Name	FN1693-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1693-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21142225	C-T	Homo
SBS	Chr11	16749525	G-A	Homo
SBS	Chr11	23679491	G-T	HET
SBS	Chr12	12175371	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g21660
SBS	Chr2	6178762	G-A	HET
SBS	Chr3	11988939	G-A	Homo
SBS	Chr3	34000664	G-A	Homo
SBS	Chr3	34079738	G-A	Homo
SBS	Chr3	34079740	A-T	Homo
SBS	Chr3	5823053	C-T	Homo
SBS	Chr4	10720978	A-T	Homo
SBS	Chr4	12568938	C-A	Homo
SBS	Chr4	17056925	T-G	HET
SBS	Chr4	17714037	T-G	HET
SBS	Chr5	20779103	C-T	Homo
SBS	Chr5	9776752	G-A	Homo	SPLICE_SITE_ACCEPTOR	LOC_Os05g17110
SBS	Chr6	24636507	A-T	Homo
SBS	Chr8	13369756	T-C	Homo
SBS	Chr8	13504233	T-G	HET
SBS	Chr8	13504242	G-T	Homo
SBS	Chr8	22962738	T-A	HET
SBS	Chr8	8073141	A-G	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	150900	150901	1
Deletion	Chr2	3627805	3627806	1
Deletion	Chr9	4283540	4283542	2
Deletion	Chr1	6678115	6678121	6
Deletion	Chr5	10540001	10716000	175999	20
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr7	11154001	11165000	10999	LOC_Os07g18840
Deletion	Chr7	11986830	11986833	3	LOC_Os07g20720
Deletion	Chr1	17459200	17459204	4
Deletion	Chr12	21110106	21110108	2
Deletion	Chr2	22026852	22026853	1	LOC_Os02g36470
Deletion	Chr12	26886516	26886530	14
Deletion	Chr4	28010432	28010447	15
Deletion	Chr4	33370183	33370185	2

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	14222078	14222080	3
Insertion	Chr10	14378282	14378282	1	LOC_Os10g27260
Insertion	Chr10	5100348	5100348	1	LOC_Os10g09460
Insertion	Chr11	1897182	1897183	2
Insertion	Chr5	17041733	17041736	4
Insertion	Chr6	29567410	29567410	1
Insertion	Chr7	18280214	18280214	1	LOC_Os07g30880
Insertion	Chr7	20468724	20468727	4
Insertion	Chr7	4124573	4124574	2
Insertion	Chr8	12161140	12161140	1	LOC_Os08g20260
Insertion	Chr8	13642396	13642396	1	LOC_Os08g22680
Insertion	Chr8	23617237	23617282	46

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7068117	7070009	LOC_Os11g12580
Inversion	Chr2	8815518	8815741
Inversion	Chr5	10540092	10942423	LOC_Os05g18294
Inversion	Chr8	13505238	14351409	2
Inversion	Chr10	14771404	15167502	2
Inversion	Chr10	14771407	15167504	2
Inversion	Chr5	16152509	16152759	LOC_Os05g27730
Inversion	Chr11	25704136	25740967
Inversion	Chr2	29982996	30029061	2

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1241762	Chr1	39841277
Translocation	Chr12	1644145	Chr6	19265140	2
Translocation	Chr11	4989801	Chr9	12121808
Translocation	Chr10	7555960	Chr8	6126921
Translocation	Chr9	8289626	Chr6	11646557
Translocation	Chr9	8290066	Chr6	11646437
Translocation	Chr7	9200056	Chr2	13477577	2
Translocation	Chr6	10177896	Chr5	10571821
Translocation	Chr4	11290552	Chr2	11320721	LOC_Os04g20230
Translocation	Chr10	12989614	Chr5	10540090	2
Translocation	Chr3	24678257	Chr2	9611229
Translocation	Chr12	27080986	Chr1	954253	2

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