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Mutant Information

Mutant Name	FN1703-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1703-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28056993	G-A	HET
SBS	Chr1	28056994	T-A	HET
SBS	Chr10	1895170	G-A	Homo
SBS	Chr10	19840084	T-C	Homo
SBS	Chr10	5392997	A-G	Homo
SBS	Chr10	5393004	A-T	Homo
SBS	Chr11	22961382	C-A	HET
SBS	Chr12	25604127	G-A	Homo
SBS	Chr2	1057536	A-T	HET
SBS	Chr2	11741964	C-T	Homo
SBS	Chr3	13864560	G-A	HET
SBS	Chr3	26452293	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46760
SBS	Chr3	5021303	A-G	HET
SBS	Chr3	5848050	T-A	HET
SBS	Chr3	7321207	A-G	HET
SBS	Chr4	1971643	C-T	Homo
SBS	Chr4	1971646	C-G	Homo
SBS	Chr4	1971650	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g04230
SBS	Chr4	6959755	C-T	Homo
SBS	Chr6	12440578	A-T	Homo
SBS	Chr6	14891183	C-T	Homo
SBS	Chr6	26320541	G-A	Homo
SBS	Chr6	6712706	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g12380
SBS	Chr7	1978566	A-G	HET
SBS	Chr7	22710315	G-A	HET
SBS	Chr7	27808674	G-T	HET
SBS	Chr7	596157	G-A	HET
SBS	Chr8	15910403	T-C	HET
SBS	Chr8	23664592	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g37400
SBS	Chr8	23950858	G-A	HET
SBS	Chr9	4413723	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08460

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	84604	84958	354
Deletion	Chr4	598620	598623	3
Deletion	Chr9	787958	787959	1
Deletion	Chr1	1259504	1259923	419
Deletion	Chr3	1358513	1358514	1
Deletion	Chr4	1614704	1614708	4
Deletion	Chr2	11738340	11738341	1
Deletion	Chr11	12087648	12087651	3
Deletion	Chr10	12583910	12583911	1	LOC_Os10g24510
Deletion	Chr6	12887001	12955000	67999	8
Deletion	Chr8	13782176	13782177	1
Deletion	Chr6	15138344	15138345	1	LOC_Os06g25890
Deletion	Chr8	17051091	17051092	1
Deletion	Chr8	18763199	18763200	1
Deletion	Chr4	20234533	20234535	2	LOC_Os04g33410
Deletion	Chr3	27725836	27725842	6
Deletion	Chr1	42553508	42553512	4	LOC_Os01g73430

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	15983382	15983459	78
Insertion	Chr11	12115576	12115576	1
Insertion	Chr11	2729463	2729526	64
Insertion	Chr11	27370142	27370142	1
Insertion	Chr12	23760671	23760742	72
Insertion	Chr4	129110	129115	6	LOC_Os04g01170
Insertion	Chr5	12568234	12568234	1

Inversions: 20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	984767	985024	LOC_Os08g02460
Inversion	Chr6	2387897	2388180	LOC_Os06g05310
Inversion	Chr7	3128357	3128636	LOC_Os07g06470
Inversion	Chr5	3816332	3816587	LOC_Os05g07220
Inversion	Chr12	5079759	5167034	LOC_Os12g09640
Inversion	Chr12	5079766	5167048	LOC_Os12g09640
Inversion	Chr6	7135270	7135512	LOC_Os06g13030
Inversion	Chr12	8029020	8029250
Inversion	Chr8	9092449	9092568
Inversion	Chr6	11360675	11416581
Inversion	Chr6	12886846	13163291	2
Inversion	Chr6	12954575	13210202	2
Inversion	Chr6	13163300	13263150	2
Inversion	Chr8	17072251	17072550
Inversion	Chr9	19471648	19471831
Inversion	Chr2	20875995	20876790
Inversion	Chr7	21213183	21213301
Inversion	Chr2	23259485	23259713	LOC_Os02g38470
Inversion	Chr12	23986652	24332913
Inversion	Chr7	27672568	27672816

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2785663	Chr8	4650014	2
Translocation	Chr9	3446706	Chr8	7125803	2
Translocation	Chr11	4231113	Chr1	31989862
Translocation	Chr8	4650007	Chr2	21197283	LOC_Os08g08170
Translocation	Chr11	5009699	Chr1	36411664	2
Translocation	Chr11	6602442	Chr8	2455439	LOC_Os11g11890
Translocation	Chr11	13220824	Chr1	40950394
Translocation	Chr7	13266463	Chr3	14801962	LOC_Os07g23480
Translocation	Chr10	13764672	Chr2	29617581
Translocation	Chr4	15937086	Chr2	15425627	2
Translocation	Chr12	16959412	Chr8	9984465	2
Translocation	Chr11	17701376	Chr8	24046280
Translocation	Chr6	19630066	Chr3	24413583
Translocation	Chr12	21526175	Chr8	7731028	2
Translocation	Chr7	22194697	Chr3	17909148
Translocation	Chr12	22237226	Chr1	13535625
Translocation	Chr6	27084503	Chr1	27776529
Translocation	Chr12	27107844	Chr7	22632770

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