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| Mutant Information |
|---|
| Mutant Name | FN1704-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1704-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
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| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13467976 | G-A | Homo | ||
| SBS | Chr1 | 20040811 | T-G | HET | ||
| SBS | Chr1 | 26237448 | C-A | HET | ||
| SBS | Chr1 | 32100807 | A-T | HET | ||
| SBS | Chr10 | 12407415 | C-T | Homo | ||
| SBS | Chr10 | 13742240 | G-A | HET | ||
| SBS | Chr11 | 11179822 | G-A | Homo | ||
| SBS | Chr11 | 19943510 | G-A | HET | ||
| SBS | Chr12 | 3637628 | A-T | HET | ||
| SBS | Chr2 | 29976584 | C-T | HET | ||
| SBS | Chr2 | 7504218 | A-G | HET | ||
| SBS | Chr3 | 16934121 | G-A | Homo | ||
| SBS | Chr3 | 27295303 | C-T | Homo | ||
| SBS | Chr3 | 30768804 | G-A | Homo | ||
| SBS | Chr3 | 30779147 | T-G | Homo | ||
| SBS | Chr3 | 6606580 | T-G | Homo | ||
| SBS | Chr4 | 32631724 | T-A | HET | ||
| SBS | Chr5 | 27400839 | G-A | Homo | ||
| SBS | Chr6 | 22818941 | G-A | HET | ||
| SBS | Chr6 | 3347030 | C-T | HET | ||
| SBS | Chr7 | 11203831 | T-C | HET | ||
| SBS | Chr7 | 18226425 | G-A | Homo | ||
| SBS | Chr7 | 24785889 | T-C | Homo | ||
| SBS | Chr8 | 12078965 | T-C | Homo | ||
| SBS | Chr9 | 14407758 | G-A | HET | ||
| SBS | Chr9 | 2589108 | G-C | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 4929662 | 4929672 | 10 | LOC_Os04g09270 |
| Deletion | Chr9 | 9359184 | 9359186 | 2 | |
| Deletion | Chr7 | 9747416 | 9747439 | 23 | |
| Deletion | Chr9 | 14741583 | 14741584 | 1 | LOC_Os09g24740 |
| Deletion | Chr11 | 15696001 | 15733000 | 36999 | 4 |
| Deletion | Chr9 | 17890348 | 17890350 | 2 | |
| Deletion | Chr5 | 19871481 | 19871484 | 3 | |
| Deletion | Chr1 | 23862630 | 23862706 | 76 | |
| Deletion | Chr2 | 24837147 | 24837157 | 10 | |
| Deletion | Chr5 | 25798572 | 25798574 | 2 | |
| Deletion | Chr3 | 27947145 | 27947146 | 1 |
Insertions: 5
Inversions: 56
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 64641 | 64948 | LOC_Os04g01080 |
| Inversion | Chr3 | 524968 | 525118 | LOC_Os03g01870 |
| Inversion | Chr9 | 936687 | 1316626 | |
| Inversion | Chr9 | 947923 | 1316634 | LOC_Os09g02310 |
| Inversion | Chr2 | 1236189 | 1902274 | |
| Inversion | Chr2 | 1236222 | 1902278 | |
| Inversion | Chr2 | 2175276 | 2175505 | LOC_Os02g04760 |
| Inversion | Chr2 | 2512167 | 2512423 | |
| Inversion | Chr12 | 2627930 | 2628127 | |
| Inversion | Chr4 | 2668682 | 2668959 | LOC_Os04g05360 |
| Inversion | Chr11 | 2934450 | 2934641 | |
| Inversion | Chr7 | 3359126 | 3359598 | LOC_Os07g06870 |
| Inversion | Chr1 | 3943093 | 3943206 | |
| Inversion | Chr5 | 4210369 | 4210536 | |
| Inversion | Chr1 | 4302782 | 4303386 | |
| Inversion | Chr7 | 5501312 | 5501761 | LOC_Os07g10250 |
| Inversion | Chr10 | 6144489 | 6144713 | 2 |
| Inversion | Chr6 | 6891491 | 6891758 | LOC_Os06g12630 |
| Inversion | Chr11 | 8409654 | 8410027 | |
| Inversion | Chr3 | 8910943 | 8911169 | LOC_Os03g16150 |
| Inversion | Chr10 | 9329806 | 9330282 | |
| Inversion | Chr9 | 9513480 | 9513657 | |
| Inversion | Chr6 | 10202507 | 10392598 | LOC_Os06g17580 |
| Inversion | Chr4 | 10872357 | 10872571 | LOC_Os04g19520 |
| Inversion | Chr1 | 11610214 | 11610716 | |
| Inversion | Chr2 | 12170875 | 12171061 | LOC_Os02g20650 |
| Inversion | Chr6 | 13282738 | 13465968 | 2 |
| Inversion | Chr6 | 13283202 | 13465976 | 2 |
| Inversion | Chr9 | 13474326 | 13474575 | |
| Inversion | Chr7 | 13607276 | 13607392 | |
| Inversion | Chr2 | 14025523 | 14025719 | |
| Inversion | Chr2 | 14714368 | 14714550 | |
| Inversion | Chr2 | 15429295 | 15429529 | |
| Inversion | Chr12 | 16463528 | 16463714 | LOC_Os12g27930 |
| Inversion | Chr5 | 17502971 | 17503280 | LOC_Os05g30200 |
| Inversion | Chr5 | 17696680 | 17696956 | LOC_Os05g30535 |
| Inversion | Chr3 | 18641524 | 18641666 | LOC_Os03g32590 |
| Inversion | Chr7 | 19403409 | 19403578 | 2 |
| Inversion | Chr5 | 19941283 | 19941516 | |
| Inversion | Chr1 | 21469898 | 21470020 | |
| Inversion | Chr1 | 21712050 | 21712327 | |
| Inversion | Chr9 | 21729820 | 21730244 | LOC_Os09g37700 |
| Inversion | Chr3 | 22695929 | 22696196 | LOC_Os03g40820 |
| Inversion | Chr10 | 22871579 | 22871714 | LOC_Os10g42439 |
| Inversion | Chr9 | 22896682 | 22896808 | |
| Inversion | Chr5 | 23653406 | 23653614 | LOC_Os05g40270 |
| Inversion | Chr1 | 23747284 | 23747538 | LOC_Os01g41890 |
| Inversion | Chr11 | 23860910 | 23861019 | |
| Inversion | Chr3 | 24565676 | 24565901 | LOC_Os03g43820 |
| Inversion | Chr6 | 29924051 | 29924162 | LOC_Os06g49380 |
| Inversion | Chr1 | 31034252 | 31034541 | |
| Inversion | Chr2 | 32260158 | 32260303 | |
| Inversion | Chr2 | 32284162 | 32284469 | LOC_Os02g52800 |
| Inversion | Chr1 | 34457046 | 34457416 | |
| Inversion | Chr2 | 35307836 | 35308079 | LOC_Os02g57660 |
| Inversion | Chr1 | 41066308 | 41066518 | LOC_Os01g70940 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 881314 | Chr1 | 36962310 | LOC_Os07g02510 |
| Translocation | Chr9 | 936697 | Chr1 | 38317390 | |
| Translocation | Chr9 | 947916 | Chr1 | 35897987 | 2 |
| Translocation | Chr7 | 5295527 | Chr5 | 24669631 | |
| Translocation | Chr8 | 13388098 | Chr4 | 2808013 | |
| Translocation | Chr11 | 13519944 | Chr5 | 7847977 | |
| Translocation | Chr11 | 14778416 | Chr8 | 985231 | 2 |
| Translocation | Chr9 | 15900307 | Chr6 | 25107112 | |
| Translocation | Chr7 | 17082002 | Chr1 | 40520614 | |
| Translocation | Chr12 | 19404054 | Chr5 | 4369792 | |
| Translocation | Chr12 | 25582727 | Chr5 | 17617492 | 2 |
| Translocation | Chr4 | 27738517 | Chr3 | 2570590 |