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Mutant Information

Mutant Name	FN1709-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1709-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34149424	C-T	Homo
SBS	Chr10	11557286	T-A	Homo
SBS	Chr10	22767030	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42280
SBS	Chr10	6183740	C-G	Homo
SBS	Chr11	14156723	C-T	HET
SBS	Chr12	10148236	A-G	HET
SBS	Chr12	15752614	A-G	HET
SBS	Chr2	10656464	G-A	HET
SBS	Chr2	18866167	T-C	HET
SBS	Chr2	20195155	A-G	HET
SBS	Chr2	6841754	G-A	HET
SBS	Chr3	21593437	C-T	HET
SBS	Chr3	25680471	C-T	Homo
SBS	Chr3	35487584	C-T	HET
SBS	Chr3	36221114	G-A	HET
SBS	Chr3	4549721	A-G	HET
SBS	Chr4	19692472	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g32670
SBS	Chr4	2647560	A-T	HET
SBS	Chr4	31961960	C-T	HET
SBS	Chr4	7105600	C-T	HET
SBS	Chr4	7201639	G-A	HET
SBS	Chr5	13920851	T-A	HET
SBS	Chr5	16189655	G-T	HET
SBS	Chr5	1813905	C-T	HET
SBS	Chr5	29781798	C-T	Homo
SBS	Chr7	11692435	C-T	Homo
SBS	Chr7	12487321	A-G	HET
SBS	Chr7	23665848	G-A	Homo
SBS	Chr8	12587533	G-A	HET	STOP_GAINED	LOC_Os08g21050
SBS	Chr8	16117429	G-T	HET
SBS	Chr9	19375717	G-A	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	8851954	8851955	1
Deletion	Chr8	10275889	10275891	2
Deletion	Chr11	10898934	10898936	2
Deletion	Chr12	11096001	11274000	177999	24
Deletion	Chr12	11295001	11332000	36999	5
Deletion	Chr12	11337001	11409000	71999	4
Deletion	Chr12	11414001	11448000	33999	5
Deletion	Chr7	12990563	12990570	7
Deletion	Chr12	17232001	17278000	45999	8
Deletion	Chr3	18002951	18002960	9
Deletion	Chr4	20486975	20486980	5	LOC_Os04g33820
Deletion	Chr12	25735822	25735823	1
Deletion	Chr6	29613694	29613695	1
Deletion	Chr4	30271001	30310000	38999	7
Deletion	Chr3	33659680	33659681	1	LOC_Os03g59120

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1141323	1141324	2
Insertion	Chr10	12195523	12195524	2
Insertion	Chr12	11407243	11407243	1
Insertion	Chr12	1443643	1443644	2
Insertion	Chr2	17055209	17055220	12
Insertion	Chr2	20156695	20156695	1
Insertion	Chr3	24933161	24933161	1
Insertion	Chr7	399733	399733	1
Insertion	Chr8	8092507	8092507	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr4	20728374	20954285
Inversion	Chr9	22089383	22089519
Inversion	Chr7	24647854	24717589
Inversion	Chr7	24648561	24717591

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5023396	Chr1	11701693
Translocation	Chr11	8617750	Chr3	21846120
Translocation	Chr12	10686231	Chr6	27688801	2
Translocation	Chr10	11914050	Chr7	19193559
Translocation	Chr10	11914057	Chr7	19192854
Translocation	Chr12	13244419	Chr6	18212923
Translocation	Chr11	16277072	Chr5	25618396	LOC_Os11g28300
Translocation	Chr11	19817778	Chr1	39521938
Translocation	Chr7	24647858	Chr4	30270476	2
Translocation	Chr7	24648560	Chr4	30312586	2
Translocation	Chr11	27545551	Chr9	9599688

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