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Mutant Information

Mutant Name	FN1728-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1728-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28107703	T-A	HET
SBS	Chr1	28107741	G-A	HET
SBS	Chr1	28646335	C-A	HET
SBS	Chr1	36308063	G-A	HET
SBS	Chr10	3678479	A-C	HET
SBS	Chr10	705045	C-T	HET
SBS	Chr11	16678229	G-T	HET
SBS	Chr11	16678230	C-T	HET
SBS	Chr12	11624642	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19950
SBS	Chr12	14320152	G-A	HET	STOP_GAINED	LOC_Os12g24930
SBS	Chr2	10884143	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g18670
SBS	Chr2	6670131	T-A	HET
SBS	Chr3	1838424	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	21400126	C-T	HET
SBS	Chr3	9740516	G-A	HET
SBS	Chr5	26664665	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46000
SBS	Chr6	14297447	G-A	HET
SBS	Chr6	14297448	T-A	HET
SBS	Chr6	6626332	C-T	HET
SBS	Chr7	18745419	G-T	HET
SBS	Chr7	2103556	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g04730
SBS	Chr9	6357635	G-A	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	467147	467148	1	LOC_Os06g01810
Deletion	Chr9	6357517	6357530	13	LOC_Os09g11420
Deletion	Chr1	7572318	7572321	3
Deletion	Chr1	8598088	8598106	18
Deletion	Chr5	8610001	8649000	38999	8
Deletion	Chr5	8654001	8710000	55999	15
Deletion	Chr12	9181385	9181403	18
Deletion	Chr3	17790813	17790814	1
Deletion	Chr2	18701741	18701753	12
Deletion	Chr12	24374787	24374788	1
Deletion	Chr5	24884042	24884044	2
Deletion	Chr2	25438848	25438852	4
Deletion	Chr3	29541110	29541111	1
Deletion	Chr3	29547906	29547922	16

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	18826712	18826717	6
Insertion	Chr5	9945326	9945326	1
Insertion	Chr6	16047129	16047197	69
Insertion	Chr7	6425782	6425782	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5472944	5473293
Inversion	Chr1	6565743	6566180	LOC_Os01g12070
Inversion	Chr6	8313410	8313717	LOC_Os06g14740
Inversion	Chr6	12709703	12709970	LOC_Os06g21980
Inversion	Chr12	14607472	14607664
Inversion	Chr8	19998279	19998712
Inversion	Chr8	26610356	26759846
Inversion	Chr8	26610366	26800610
Inversion	Chr5	28853318	29582923
Inversion	Chr5	28853324	29582966

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5127955	Chr1	6039257
Translocation	Chr8	8993012	Chr4	23032110	2
Translocation	Chr10	10311740	Chr4	5525928
Translocation	Chr12	10628640	Chr6	16470892	LOC_Os12g18374
Translocation	Chr8	14737312	Chr7	5214901
Translocation	Chr8	26759848	Chr1	967415
Translocation	Chr8	26800590	Chr1	967400
Translocation	Chr12	27317417	Chr11	15082160

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