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Mutant Information

Mutant Name	FN1734-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1734-S Alignment File
Seed Availability	No
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36075788	G-A	HET
SBS	Chr1	39845783	C-G	HET
SBS	Chr10	21982380	C-G	HET
SBS	Chr10	22905633	G-T	HET
SBS	Chr2	1697287	T-A	HET
SBS	Chr2	27272004	C-A	HET
SBS	Chr3	20364070	G-A	HET
SBS	Chr4	12754778	G-C	HET
SBS	Chr4	8712135	G-C	HET
SBS	Chr5	11753304	C-G	Homo
SBS	Chr5	20214090	G-A	HET
SBS	Chr6	14548126	T-C	HET
SBS	Chr6	17540443	A-T	HET
SBS	Chr6	18214619	T-A	HET
SBS	Chr6	3088930	G-T	HET
SBS	Chr7	26760017	G-A	Homo
SBS	Chr7	5293606	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g09940
SBS	Chr7	5897496	T-A	Homo
SBS	Chr8	2579479	C-A	Homo
SBS	Chr9	1334519	C-G	Homo
SBS	Chr9	17760291	G-A	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1344001	1390000	45999	9
Deletion	Chr8	4028096	4028097	1
Deletion	Chr5	9017197	9017209	12	LOC_Os05g15970
Deletion	Chr4	9549507	9549509	2
Deletion	Chr4	9576661	9576726	65	LOC_Os04g17500
Deletion	Chr12	10520727	10520728	1
Deletion	Chr4	11826572	11826573	1	LOC_Os04g21030
Deletion	Chr2	11964596	11964597	1
Deletion	Chr1	17056062	17056088	26	LOC_Os01g31190
Deletion	Chr8	20729001	20741000	11999	2
Deletion	Chr4	23252001	23262000	9999
Deletion	Chr2	23921001	23940000	18999
Deletion	Chr4	24713489	24713490	1	LOC_Os04g41690
Deletion	Chr3	26905001	26916000	10999
Deletion	Chr2	27880120	27880125	5
Deletion	Chr6	29619020	29619021	1	LOC_Os06g48920
Deletion	Chr1	37667001	37678000	10999	2

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	41591047	41591047	1
Insertion	Chr11	25772785	25772787	3
Insertion	Chr12	11995653	11995653	1
Insertion	Chr12	15721069	15721070	2
Insertion	Chr12	3369689	3369690	2
Insertion	Chr3	12564474	12564475	2
Insertion	Chr3	16852251	16852252	2
Insertion	Chr4	10182469	10182469	1
Insertion	Chr4	10915131	10915131	1	LOC_Os04g19590
Insertion	Chr4	2313217	2313218	2
Insertion	Chr5	7664025	7664025	1
Insertion	Chr7	22554021	22554021	1
Insertion	Chr7	27766716	27766750	35

Inversions: 17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1987098	1987413	LOC_Os07g04500
Inversion	Chr11	2682625	2682944	2
Inversion	Chr5	6129687	6482207
Inversion	Chr5	6129699	6482219
Inversion	Chr11	6641847	6832561	2
Inversion	Chr3	7827865	7828270	2
Inversion	Chr2	12416310	12978543	LOC_Os02g20980
Inversion	Chr9	13297181	13297474	LOC_Os09g21960
Inversion	Chr12	14537244	14538633
Inversion	Chr12	14537412	14538940
Inversion	Chr8	17682322	17683531	2
Inversion	Chr9	19432913	19433312
Inversion	Chr1	20105391	20106615
Inversion	Chr7	21840737	21840885
Inversion	Chr3	25299027	25299223	LOC_Os03g44840
Inversion	Chr4	27757786	27758046
Inversion	Chr2	27887143	27887290	LOC_Os02g45780

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	428097	Chr3	23730051	LOC_Os06g01730
Translocation	Chr7	2280346	Chr4	20113981
Translocation	Chr9	2541645	Chr6	21522627
Translocation	Chr12	2960173	Chr2	11267535	2
Translocation	Chr9	5669484	Chr2	17526015
Translocation	Chr10	10540511	Chr1	38170057	2
Translocation	Chr9	12955377	Chr1	33750971	LOC_Os09g21430
Translocation	Chr5	17232419	Chr3	20467848	2
Translocation	Chr10	20738872	Chr3	25343032	2
Translocation	Chr7	24489686	Chr2	7072515
Translocation	Chr3	32459731	Chr1	35462498

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