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Mutant Information

Mutant Name	FN1735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1735-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7140538	C-T	HET
SBS	Chr1	27687661	G-T	HET
SBS	Chr1	32043054	A-G	HET
SBS	Chr2	24157771	G-A	HET
SBS	Chr2	35542152	T-C	HET
SBS	Chr3	7034572	G-A	Homo
SBS	Chr3	13112463	T-C	HET
SBS	Chr3	13113200	G-C	HET
SBS	Chr3	15523904	C-T	HET
SBS	Chr3	19640645	T-C	HET
SBS	Chr3	19834066	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g35788
SBS	Chr3	29750257	C-T	Homo
SBS	Chr4	3865011	C-A	HET
SBS	Chr4	4235414	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07944
SBS	Chr4	8385329	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14900
SBS	Chr4	29314722	C-G	HET
SBS	Chr4	29361230	T-A	HET
SBS	Chr6	1107683	G-A	HET
SBS	Chr6	1764994	T-C	HET
SBS	Chr6	17279524	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30020
SBS	Chr6	17364138	G-A	Homo
SBS	Chr6	22966454	T-C	HET
SBS	Chr6	30588023	C-T	HET
SBS	Chr7	21153658	C-T	HET
SBS	Chr8	6685630	T-C	HET
SBS	Chr9	2562488	T-A	HET
SBS	Chr10	413270	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g01610
SBS	Chr10	7130967	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12770
SBS	Chr10	11013703	C-T	Homo
SBS	Chr10	12531123	C-T	Homo
SBS	Chr10	16316636	A-G	HET
SBS	Chr10	17239467	T-C	HET
SBS	Chr11	5646325	T-A	HET
SBS	Chr11	7412217	G-A	HET
SBS	Chr11	8520170	C-T	HET
SBS	Chr11	21113191	A-T	HET
SBS	Chr12	3995526	A-G	Homo
SBS	Chr12	15225537	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26140
SBS	Chr12	19221222	C-A	HET

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2206521	2206522	1	LOC_Os09g04190
Deletion	Chr12	2739001	2897000	157999	20
Deletion	Chr12	3274288	3274303	15
Deletion	Chr12	4141398	4141399	1
Deletion	Chr2	10194678	10194679	1
Deletion	Chr7	17171326	17171329	3
Deletion	Chr7	17647001	17847000	199999	25
Deletion	Chr8	19206441	19206452	11
Deletion	Chr12	22162589	22162595	6
Deletion	Chr4	23112158	23112162	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	24157573	24157573	1
Insertion	Chr8	20836443	20836444	2

Inversions: 13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2015503	2015874	LOC_Os02g04530
Inversion	Chr12	2669995	2738612	2
Inversion	Chr6	6624712	7046536
Inversion	Chr6	6624729	7046547
Inversion	Chr9	15563937	15564375
Inversion	Chr4	16990382	16990616
Inversion	Chr9	18012180	18012435	LOC_Os09g29620
Inversion	Chr1	18496345	18789915
Inversion	Chr9	18871802	18872107	LOC_Os09g31390
Inversion	Chr1	19266542	19342635	LOC_Os01g34890
Inversion	Chr7	21517681	22275177
Inversion	Chr1	29678525	29678648
Inversion	Chr3	34634233	34634529	LOC_Os03g60950

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2670005	Chr11	16030297	2
Translocation	Chr12	2896320	Chr11	16030105	2
Translocation	Chr11	14356146	Chr7	21168221	2
Translocation	Chr11	14356351	Chr7	21693128	2
Translocation	Chr7	18622180	Chr1	18638037	2
Translocation	Chr12	20710693	Chr10	6314387	LOC_Os12g34160
Translocation	Chr7	21680216	Chr4	26240978
Translocation	Chr7	21693122	Chr4	26241053	LOC_Os07g36280

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