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Mutant Information

Mutant Name	FN1737-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1737-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24243844	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42620
SBS	Chr1	28253484	C-T	HET
SBS	Chr1	33099868	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57280
SBS	Chr1	5665142	C-T	HET
SBS	Chr10	12147670	T-C	HET
SBS	Chr11	14886997	C-T	HET
SBS	Chr11	14886998	C-T	HET
SBS	Chr11	22222037	G-T	HET
SBS	Chr11	3546874	T-A	Homo
SBS	Chr11	3546876	T-A	Homo
SBS	Chr11	3546879	T-A	Homo
SBS	Chr12	15098290	C-T	HET
SBS	Chr12	1803336	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04260
SBS	Chr12	1803337	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04260
SBS	Chr12	23096761	A-T	Homo
SBS	Chr12	25376031	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41000
SBS	Chr2	10401778	T-A	Homo
SBS	Chr2	13884176	G-A	Homo
SBS	Chr2	27580454	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g45370
SBS	Chr2	4213916	A-G	HET
SBS	Chr2	7566517	C-A	HET
SBS	Chr2	928490	A-G	Homo
SBS	Chr3	2655683	C-G	HET
SBS	Chr3	28268515	G-A	HET
SBS	Chr3	7456805	C-T	HET
SBS	Chr4	20146712	C-T	HET
SBS	Chr4	8104219	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g14490
SBS	Chr5	20559590	G-T	HET
SBS	Chr5	3987987	A-C	Homo
SBS	Chr6	12189493	C-T	HET
SBS	Chr6	29131839	G-A	HET
SBS	Chr6	6708126	A-T	HET
SBS	Chr7	11208368	G-A	Homo
SBS	Chr7	25303821	G-A	HET
SBS	Chr8	11774021	C-T	Homo
SBS	Chr8	5194750	G-A	Homo
SBS	Chr9	13835888	G-A	HET
SBS	Chr9	15733328	G-A	HET
SBS	Chr9	4477862	C-T	HET
SBS	Chr9	9744082	G-T	HET	STOP_GAINED	LOC_Os09g15950

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1157217	1157218	1
Deletion	Chr7	2095462	2095463	1
Deletion	Chr8	2503356	2503358	2
Deletion	Chr10	4089629	4089755	126
Deletion	Chr6	5285847	5285859	12	LOC_Os06g10280
Deletion	Chr5	7263194	7263195	1
Deletion	Chr2	7764001	7798000	33999	5
Deletion	Chr2	7922833	7922834	1
Deletion	Chr7	10222991	10222992	1
Deletion	Chr4	11507508	11507512	4
Deletion	Chr10	11619732	11619733	1
Deletion	Chr2	15964478	15964489	11	LOC_Os02g27130
Deletion	Chr4	16954093	16954102	9
Deletion	Chr3	17724083	17724090	7
Deletion	Chr7	19671630	19671632	2
Deletion	Chr2	21417901	21417902	1
Deletion	Chr11	25032001	25049000	16999	3
Deletion	Chr11	25078001	25272000	193999	23
Deletion	Chr11	25416001	25766000	349999	59
Deletion	Chr6	26744083	26744084	1
Deletion	Chr7	29530802	29530820	18
Deletion	Chr1	31303814	31303815	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29019533	29019608	76
Insertion	Chr10	15399535	15399611	77
Insertion	Chr11	22767910	22767910	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5663819	5818105	2
Inversion	Chr2	5663826	5818113	2
Inversion	Chr2	7763986	8070321	2
Inversion	Chr2	7798587	8070337	2
Inversion	Chr6	8937569	9029717	LOC_Os06g15750
Inversion	Chr6	8937584	9029726	LOC_Os06g15750
Inversion	Chr4	12858536	13797159	2
Inversion	Chr4	12858815	13797190	2
Inversion	Chr4	19044779	19044884	LOC_Os04g31804
Inversion	Chr2	23606543	23606726	LOC_Os02g39080

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1411200	Chr2	16564865	LOC_Os03g03290
Translocation	Chr3	1411236	Chr2	16571156	LOC_Os03g03290
Translocation	Chr12	25194111	Chr8	11496200	2

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