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Mutant Information

Mutant Name	FN1742-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1742-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17819327	G-C	HET
SBS	Chr1	28124056	G-A	Homo
SBS	Chr10	3201738	T-A	HET
SBS	Chr11	14134385	A-C	Homo
SBS	Chr12	23872847	G-T	HET
SBS	Chr12	4117187	G-A	HET
SBS	Chr12	496706	T-G	HET
SBS	Chr2	30277452	G-T	Homo
SBS	Chr4	15937864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26940
SBS	Chr4	34563303	T-A	Homo
SBS	Chr5	19696309	A-C	Homo
SBS	Chr5	26579716	T-A	HET
SBS	Chr5	29144829	C-T	HET
SBS	Chr5	8299214	A-T	HET
SBS	Chr5	9313388	C-G	HET
SBS	Chr6	16686291	C-T	HET
SBS	Chr6	4027149	C-T	HET
SBS	Chr7	18212445	T-A	Homo
SBS	Chr8	11600363	C-T	HET
SBS	Chr8	25829092	C-T	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	33200	33203	3	LOC_Os04g01040
Deletion	Chr3	5013164	5013170	6
Deletion	Chr12	5613186	5613193	7	LOC_Os12g10570
Deletion	Chr12	5614131	5614132	1
Deletion	Chr2	6153229	6153230	1
Deletion	Chr3	8222801	8222802	1
Deletion	Chr11	9924050	9924059	9
Deletion	Chr10	10832672	10832687	15
Deletion	Chr10	11387839	11387841	2
Deletion	Chr7	19632642	19632651	9
Deletion	Chr7	20340604	20340613	9
Deletion	Chr1	20823953	20823955	2
Deletion	Chr11	26529534	26529538	4	LOC_Os11g43934
Deletion	Chr8	26620581	26620583	2
Deletion	Chr1	33386365	33386373	8
Deletion	Chr1	39481764	39481765	1
Deletion	Chr1	40362001	40380000	17999	3

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12050903	12050903	1
Insertion	Chr1	27134019	27134020	2
Insertion	Chr1	31772635	31772635	1
Insertion	Chr1	33515997	33515999	3
Insertion	Chr1	42765371	42765371	1
Insertion	Chr1	7608440	7608441	2
Insertion	Chr2	14271262	14271264	3
Insertion	Chr7	12164074	12164074	1
Insertion	Chr7	23524219	23524220	2
Insertion	Chr7	25585925	25585925	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5990834	6294088	2
Inversion	Chr1	7905954	7906241
Inversion	Chr3	9527093	9527400
Inversion	Chr7	20931165	21326746
Inversion	Chr7	20931315	21025834	2
Inversion	Chr1	35197137	35197450

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1398503	Chr9	17421048
Translocation	Chr10	1895220	Chr4	22319456
Translocation	Chr11	9110468	Chr7	11162437	LOC_Os11g16470
Translocation	Chr12	9951551	Chr6	20870998
Translocation	Chr7	10131765	Chr1	2653662	2
Translocation	Chr7	10133240	Chr1	2653653	2
Translocation	Chr11	10466791	Chr2	14769436	2
Translocation	Chr11	12699399	Chr7	14859438	LOC_Os11g22130
Translocation	Chr12	13371984	Chr10	16479591	LOC_Os12g23590
Translocation	Chr10	14438616	Chr7	21326868	LOC_Os10g27360
Translocation	Chr10	14438811	Chr7	21008187	LOC_Os10g27360
Translocation	Chr2	19416460	Chr1	18686916	2
Translocation	Chr11	20993421	Chr7	21008190	LOC_Os11g35762
Translocation	Chr11	20993739	Chr10	14438810	2
Translocation	Chr11	20993741	Chr7	21326868	LOC_Os11g35762
Translocation	Chr7	21008186	Chr1	40380009
Translocation	Chr8	28298727	Chr1	40370783	LOC_Os08g45080
Translocation	Chr8	28298731	Chr3	36036469	LOC_Os08g45080

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