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Mutant Information

Mutant Name	FN1754-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1754-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18133732	T-A	HET
SBS	Chr1	26418151	G-A	HET
SBS	Chr2	5504339	A-T	HET
SBS	Chr2	5696555	A-C	HET
SBS	Chr2	18869606	C-T	HET
SBS	Chr2	24906512	C-T	Homo
SBS	Chr2	34282939	C-T	Homo
SBS	Chr3	6431764	A-T	HET
SBS	Chr3	6583205	T-C	HET
SBS	Chr3	22820923	C-T	HET
SBS	Chr4	814055	G-A	HET	STOP_GAINED	LOC_Os04g02320
SBS	Chr4	11635791	T-C	Homo
SBS	Chr4	11860846	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g21100
SBS	Chr6	28767883	C-T	HET
SBS	Chr7	8775431	G-A	HET
SBS	Chr7	13145644	G-C	HET
SBS	Chr7	16535241	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28320
SBS	Chr7	18408545	G-A	HET
SBS	Chr7	19792194	G-A	Homo
SBS	Chr7	20426070	A-T	HET
SBS	Chr8	17421951	A-G	HET
SBS	Chr8	23817710	A-G	Homo
SBS	Chr9	664048	A-G	HET
SBS	Chr9	10980646	C-A	HET
SBS	Chr9	21356929	G-T	HET
SBS	Chr9	21923752	G-C	HET
SBS	Chr10	8548769	G-A	HET
SBS	Chr10	19806358	T-G	HET
SBS	Chr11	8688934	C-G	HET
SBS	Chr11	13046725	C-T	HET
SBS	Chr11	15483634	T-C	HET
SBS	Chr11	18197484	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31220
SBS	Chr12	5446201	G-A	HET
SBS	Chr12	21058683	C-A	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	701702	701703	1
Deletion	Chr12	5177178	5178097	919
Deletion	Chr2	6430403	6430406	3	LOC_Os02g12350
Deletion	Chr8	17299048	17299138	90
Deletion	Chr6	19577001	19825000	247999	40
Deletion	Chr5	19781880	19781886	6	LOC_Os05g33630
Deletion	Chr2	19931001	20141000	209999	26
Deletion	Chr3	23285253	23285254	1	LOC_Os03g41920

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	9185086	9185087	2
Insertion	Chr3	31552236	31552237	2
Insertion	Chr9	6695975	6695976	2
Insertion	Chr9	6535410	6535410	1
Insertion	Chr10	3190532	3190532	1
Insertion	Chr10	22675858	22675858	1

Inversions: 16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	79907	80327	LOC_Os03g01110
Inversion	Chr1	201752	202060	2
Inversion	Chr5	3759818	3760184
Inversion	Chr2	5533262	5533509	LOC_Os02g10520
Inversion	Chr8	5747577	5747964	LOC_Os08g09940
Inversion	Chr4	6133919	6134160
Inversion	Chr8	12140622	12140786
Inversion	Chr5	20051022	20051302
Inversion	Chr3	22651767	23614867	2
Inversion	Chr3	22651790	23614886	2
Inversion	Chr4	23198936	23199149
Inversion	Chr11	25301253	25301484
Inversion	Chr12	26524292	27365191	LOC_Os12g42690
Inversion	Chr12	26524314	27365244	LOC_Os12g42690
Inversion	Chr5	28225207	28225404	LOC_Os05g49180
Inversion	Chr3	34869536	34869868

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9676482	Chr4	7094370	LOC_Os11g17360
Translocation	Chr12	27106142	Chr6	28768100

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