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Mutant Information

Mutant Name	FN1759-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1759-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21765491	G-C	HET
SBS	Chr1	34189988	A-C	Homo
SBS	Chr1	4375184	G-A	Homo
SBS	Chr10	19755796	T-C	Homo
SBS	Chr10	22275685	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41440
SBS	Chr10	9573390	C-T	Homo
SBS	Chr10	9573391	C-T	Homo
SBS	Chr11	11442832	G-T	HET
SBS	Chr11	2498120	G-T	HET
SBS	Chr11	9040952	G-A	HET
SBS	Chr12	26444643	T-G	HET
SBS	Chr2	23757626	A-C	Homo
SBS	Chr2	2827735	C-T	HET
SBS	Chr2	28286475	A-C	HET
SBS	Chr2	9948515	C-G	HET
SBS	Chr3	17932700	C-T	HET
SBS	Chr3	30863151	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g53810
SBS	Chr4	11221577	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20140
SBS	Chr4	13752198	A-C	Homo
SBS	Chr5	12814839	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g22560
SBS	Chr6	17363233	G-T	HET
SBS	Chr6	25706396	A-T	Homo
SBS	Chr6	27259341	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g45050
SBS	Chr6	27259342	G-A	Homo
SBS	Chr7	11202939	G-A	Homo
SBS	Chr7	14314103	G-C	HET
SBS	Chr8	19843003	C-T	HET
SBS	Chr8	6740523	A-T	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1091001	1114000	22999	4
Deletion	Chr8	2560912	2560913	1	LOC_Os08g04990
Deletion	Chr12	5142444	5142447	3
Deletion	Chr11	7242274	7242327	53
Deletion	Chr3	7442863	7442864	1
Deletion	Chr4	8504916	8504920	4
Deletion	Chr11	9543001	9580000	36999	2
Deletion	Chr11	9586001	9610000	23999	4
Deletion	Chr11	9629001	9686000	56999	9
Deletion	Chr10	15120558	15120559	1	LOC_Os10g29010
Deletion	Chr4	15293681	15293689	8
Deletion	Chr5	15739566	15739567	1
Deletion	Chr12	16318893	16318897	4
Deletion	Chr11	17402989	17402990	1
Deletion	Chr5	19167931	19167934	3	LOC_Os05g32730
Deletion	Chr1	22566001	22592000	25999	5
Deletion	Chr1	29479117	29479119	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24427208	24427209	2
Insertion	Chr10	13779123	13779124	2
Insertion	Chr11	23637084	23637084	1
Insertion	Chr12	17115290	17115290	1
Insertion	Chr2	35105664	35105666	3
Insertion	Chr2	379397	379397	1
Insertion	Chr3	14126142	14126142	1
Insertion	Chr7	9705533	9705533	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	471296	471555	LOC_Os08g01780
Inversion	Chr11	17620583	17621014
Inversion	Chr4	25062725	25063012	LOC_Os04g42360
Inversion	Chr2	32367690	32367924

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1762998	Chr4	29790489
Translocation	Chr4	13171073	Chr1	8783372
Translocation	Chr2	16792158	Chr1	25633820	2

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