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Mutant Information

Mutant Name	FN1761-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1761-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20282606	T-A	Homo
SBS	Chr1	20938947	G-T	Homo
SBS	Chr1	28664344	T-A	Homo
SBS	Chr1	33467625	C-G	HET
SBS	Chr10	20074557	A-T	Homo
SBS	Chr11	13390417	A-G	Homo
SBS	Chr12	12612891	G-T	HET
SBS	Chr12	13221775	T-C	HET
SBS	Chr12	21569945	G-A	HET
SBS	Chr2	11338698	G-C	Homo
SBS	Chr2	19248589	T-C	Homo
SBS	Chr2	28825581	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g47220
SBS	Chr3	13559330	C-T	Homo
SBS	Chr3	22619841	T-G	HET
SBS	Chr3	24734812	G-A	HET
SBS	Chr3	27903072	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g48990
SBS	Chr3	34439027	C-T	HET
SBS	Chr3	34439033	C-T	HET
SBS	Chr4	14572693	T-C	HET
SBS	Chr5	1114546	T-A	Homo
SBS	Chr5	3079607	A-T	Homo
SBS	Chr6	19758230	A-G	HET
SBS	Chr6	4337561	G-A	HET
SBS	Chr7	1533594	C-T	HET
SBS	Chr7	20923497	C-T	Homo
SBS	Chr7	24204869	T-G	HET
SBS	Chr7	25927428	G-A	HET
SBS	Chr7	8020454	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14060
SBS	Chr9	21252569	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36850
SBS	Chr9	21767780	C-T	HET
SBS	Chr9	22161503	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38520
SBS	Chr9	22161505	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38520

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1802770	1802771	1
Deletion	Chr2	2633762	2633764	2
Deletion	Chr8	5337766	5337767	1
Deletion	Chr6	6141558	6141559	1
Deletion	Chr1	10798045	10798046	1
Deletion	Chr7	12182670	12182671	1
Deletion	Chr8	13333994	13334002	8	LOC_Os08g22080
Deletion	Chr8	13342478	13342484	6	LOC_Os08g22110
Deletion	Chr6	14174001	14188000	13999	4
Deletion	Chr6	14190001	14255000	64999	10
Deletion	Chr12	14916489	14916490	1	LOC_Os12g25720
Deletion	Chr6	14966001	15076000	109999	23

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	15134468	15134468	1
Insertion	Chr12	13563755	13563755	1
Insertion	Chr2	6393962	6393964	3
Insertion	Chr4	15147584	15147584	1
Insertion	Chr6	4738560	4738561	2
Insertion	Chr7	17051582	17051583	2
Insertion	Chr7	1969174	1969175	2

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5902871	Chr3	24413754
Translocation	Chr4	9968190	Chr1	18234570	2
Translocation	Chr6	10932697	Chr3	23077806	LOC_Os06g19210
Translocation	Chr6	10932794	Chr3	23077707	LOC_Os06g19210
Translocation	Chr7	23408491	Chr4	22035009	LOC_Os07g39040
Translocation	Chr8	24077240	Chr2	25044700

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