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Mutant Information

Mutant Name	FN2080-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2080-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13232029	G-C	HET
SBS	Chr1	31378079	T-G	HET
SBS	Chr1	32153541	T-C	HET
SBS	Chr1	39528244	A-C	HET
SBS	Chr1	5439574	T-A	Homo
SBS	Chr11	24669461	A-G	HET
SBS	Chr11	24942324	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41580
SBS	Chr11	7144791	A-G	HET
SBS	Chr12	17675953	G-A	Homo
SBS	Chr12	23202663	C-T	HET
SBS	Chr12	27449942	A-G	HET
SBS	Chr2	12695254	C-T	HET
SBS	Chr2	14348740	T-C	HET
SBS	Chr2	4527017	G-A	HET
SBS	Chr2	4580644	A-G	HET
SBS	Chr2	6769629	C-A	HET
SBS	Chr3	16359854	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28400
SBS	Chr3	7914700	T-A	HET
SBS	Chr4	15916543	G-C	HET
SBS	Chr4	16999862	T-G	HET
SBS	Chr4	6322843	G-A	HET
SBS	Chr4	6322844	T-A	HET
SBS	Chr4	9384298	G-A	HET
SBS	Chr4	9384299	A-C	HET
SBS	Chr5	26216254	T-C	HET
SBS	Chr5	470012	G-A	Homo
SBS	Chr6	15671998	T-C	HET
SBS	Chr6	20714236	G-A	HET
SBS	Chr6	25216196	T-C	HET
SBS	Chr7	10842949	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18300
SBS	Chr7	13683830	C-T	HET
SBS	Chr7	16525832	T-C	Homo
SBS	Chr7	18712756	T-A	Homo
SBS	Chr7	19420548	C-T	Homo
SBS	Chr7	19708927	A-T	Homo
SBS	Chr7	6966125	C-A	HET
SBS	Chr7	8306434	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14560
SBS	Chr9	11203382	T-A	HET
SBS	Chr9	22158640	C-A	HET
SBS	Chr9	3300834	G-A	HET
SBS	Chr9	7057744	A-G	Homo
SBS	Chr9	8046751	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13740

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1255020	1255021	1
Deletion	Chr9	2030486	2030490	4
Deletion	Chr4	2072001	2085000	12999	LOC_Os04g04390
Deletion	Chr4	2177001	2356000	178999	31
Deletion	Chr4	2366001	2432000	65999	9
Deletion	Chr4	2439001	2569000	129999	13
Deletion	Chr4	2585001	2631000	45999	11
Deletion	Chr4	2878001	2950000	71999	9
Deletion	Chr5	3448903	3448913	10
Deletion	Chr2	10062448	10062449	1
Deletion	Chr11	13903289	13903291	2
Deletion	Chr4	16006377	16006378	1
Deletion	Chr9	16653800	16653806	6
Deletion	Chr11	17839001	18052000	212999	32
Deletion	Chr7	19157418	19157439	21
Deletion	Chr7	19189721	19189722	1
Deletion	Chr7	19463606	19463625	19	LOC_Os07g32630
Deletion	Chr11	22062022	22062026	4
Deletion	Chr12	23132001	23146000	13999	LOC_Os12g37690
Deletion	Chr1	27428083	27428084	1
Deletion	Chr5	29119186	29119187	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	2798908	2798909	2
Insertion	Chr5	20461634	20461637	4
Insertion	Chr6	630575	630575	1
Insertion	Chr8	16212030	16212031	2

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	360892	1145481
Inversion	Chr11	1485259	1485398	LOC_Os11g03780
Inversion	Chr2	2474775	3391978	LOC_Os02g05180
Inversion	Chr2	2474780	3391980	LOC_Os02g05180
Inversion	Chr11	4455077	4455351
Inversion	Chr3	9151110	9151346
Inversion	Chr8	15502460	15502622	LOC_Os08g25470
Inversion	Chr11	17434917	18207873	LOC_Os11g29990
Inversion	Chr6	17874598	17874928
Inversion	Chr3	23221748	23222016	LOC_Os03g41820
Inversion	Chr2	31373358	31477337	2
Inversion	Chr2	31373359	31477359	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1148625	Chr2	25364403
Translocation	Chr5	1148633	Chr2	25364268
Translocation	Chr12	2363959	Chr9	21264758
Translocation	Chr12	13244419	Chr6	18212923
Translocation	Chr11	15116921	Chr4	16850716	2
Translocation	Chr11	15119400	Chr4	16850755	2
Translocation	Chr11	17538825	Chr2	21868990	2
Translocation	Chr11	17937586	Chr6	7278777	2
Translocation	Chr11	18052435	Chr2	21869033	2
Translocation	Chr11	18208023	Chr6	25663354

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