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Mutant Information

Mutant Name	FN2085-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2085-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14393417	G-A	HET
SBS	Chr1	15660559	T-C	HET	SPLICE_SITE_DONOR	LOC_Os01g28000
SBS	Chr1	18119707	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32990
SBS	Chr1	24185770	G-A	Homo
SBS	Chr1	30673891	C-A	HET
SBS	Chr1	35841081	T-C	Homo
SBS	Chr2	3841407	A-T	HET
SBS	Chr2	4632964	A-T	HET
SBS	Chr2	6764463	A-T	HET
SBS	Chr2	8289236	A-C	HET
SBS	Chr2	25612702	A-T	HET
SBS	Chr2	27424698	C-G	Homo
SBS	Chr3	1965196	A-G	HET
SBS	Chr3	7490459	T-A	Homo
SBS	Chr3	15822283	C-T	Homo
SBS	Chr3	26340305	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46550
SBS	Chr3	26645708	T-C	HET
SBS	Chr4	2719133	G-A	HET
SBS	Chr4	12004120	A-T	HET
SBS	Chr4	26769522	T-C	HET
SBS	Chr5	9737278	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g17050
SBS	Chr5	9997702	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17410
SBS	Chr5	10991111	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18940
SBS	Chr5	15602732	G-T	HET
SBS	Chr5	15602733	T-G	HET
SBS	Chr5	15602735	G-T	HET
SBS	Chr5	18279445	C-G	Homo
SBS	Chr5	28513326	A-G	HET
SBS	Chr6	16638126	C-A	Homo
SBS	Chr6	23683360	G-A	Homo
SBS	Chr6	25850936	A-G	HET
SBS	Chr7	14301185	C-A	HET
SBS	Chr7	16280609	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g27900
SBS	Chr7	28114885	C-A	Homo
SBS	Chr8	9196504	G-T	HET
SBS	Chr8	9196505	A-G	HET
SBS	Chr8	24940376	A-G	HET
SBS	Chr9	14324879	G-C	Homo
SBS	Chr9	18271155	A-G	HET
SBS	Chr9	22221759	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38630
SBS	Chr10	2707179	A-C	HET
SBS	Chr10	2957920	A-G	HET
SBS	Chr10	4934277	C-A	Homo
SBS	Chr10	11334327	G-A	Homo
SBS	Chr10	11495897	T-C	HET
SBS	Chr10	12428448	T-C	HET
SBS	Chr10	16412504	C-A	HET
SBS	Chr10	22766738	C-G	Homo
SBS	Chr11	10592020	C-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2330256	2330259	3
Deletion	Chr8	6201309	6201490	181
Deletion	Chr3	7877320	7877333	13	LOC_Os03g14510
Deletion	Chr5	9578077	9578084	7	LOC_Os05g16810
Deletion	Chr3	13356192	13356194	2
Deletion	Chr3	16699500	16699519	19
Deletion	Chr3	16744001	16780000	35999	5
Deletion	Chr11	24243978	24243991	13
Deletion	Chr7	24780101	24780103	2
Deletion	Chr2	26239410	26239419	9
Deletion	Chr2	27417641	27417643	2
Deletion	Chr1	30542967	30542968	1	LOC_Os01g53160

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	7927151	7927183	33	LOC_Os03g14600
Insertion	Chr6	14476374	14476374	1
Insertion	Chr6	28763937	28763939	3	LOC_Os06g47510
Insertion	Chr8	20286334	20286367	34
Insertion	Chr11	21379748	21379749	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1499149	1499252
Inversion	Chr7	12903849	12904063	LOC_Os07g22890
Inversion	Chr6	16477606	17061966	2
Inversion	Chr1	23881643	24038464	2
Inversion	Chr1	23881651	24038477	2
Inversion	Chr11	24242427	24250207
Inversion	Chr3	33943841	33944041	LOC_Os03g59620

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8228135	Chr5	8546812
Translocation	Chr12	9135217	Chr8	9992196	LOC_Os12g16030
Translocation	Chr7	10222779	Chr1	1378166
Translocation	Chr6	16477602	Chr3	16739600	2
Translocation	Chr6	17061951	Chr3	16744180	LOC_Os06g29710
Translocation	Chr7	22069268	Chr6	25276925	LOC_Os07g36830
Translocation	Chr4	33532312	Chr1	41587063	2

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