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Mutant Information

Mutant Name	FN2088-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2088-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11316426	C-T	HET
SBS	Chr1	15948409	A-G	Homo
SBS	Chr1	29054376	A-G	Homo
SBS	Chr10	8065583	A-T	HET
SBS	Chr11	14486547	G-C	HET
SBS	Chr12	23773748	A-T	HET
SBS	Chr2	10131158	G-A	HET
SBS	Chr2	29379619	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g48000
SBS	Chr3	10420953	C-A	HET
SBS	Chr3	23203584	C-T	HET
SBS	Chr4	1554252	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03560
SBS	Chr4	33826216	G-C	Homo
SBS	Chr4	5661918	G-A	Homo
SBS	Chr4	8574555	G-A	HET
SBS	Chr5	19500511	G-A	HET
SBS	Chr8	15236360	A-T	HET
SBS	Chr8	1602324	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g03420
SBS	Chr8	17140573	C-T	HET
SBS	Chr8	19261297	A-G	HET
SBS	Chr8	19741974	A-T	HET
SBS	Chr8	23551804	G-A	HET
SBS	Chr8	23551805	C-A	HET
SBS	Chr8	9601094	T-C	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	4995202	4995387	185
Deletion	Chr7	6952568	6952581	13
Deletion	Chr9	9159001	9256000	96999	13
Deletion	Chr12	14835345	14835347	2
Deletion	Chr9	17890348	17890350	2
Deletion	Chr2	20373905	20373906	1
Deletion	Chr7	20657334	20657336	2	LOC_Os07g34450
Deletion	Chr11	22786001	22802000	15999	3
Deletion	Chr4	30813909	30813915	6	LOC_Os04g51930
Deletion	Chr4	31026519	31026527	8
Deletion	Chr4	33848735	33848736	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	10487011	10487012	2
Insertion	Chr10	1051332	1051332	1
Insertion	Chr3	24153002	24153002	1
Insertion	Chr3	36335753	36335754	2
Insertion	Chr8	8856906	8856908	3
Insertion	Chr9	5933389	5933389	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1999345	1999579
Inversion	Chr11	5107092	5110579	2
Inversion	Chr5	13538894	13745070	LOC_Os05g23610
Inversion	Chr5	13538905	13746274	2
Inversion	Chr11	14603484	14603687
Inversion	Chr6	20819735	20819966

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3822625	Chr4	28805483	LOC_Os12g07620
Translocation	Chr7	9398940	Chr5	14158318
Translocation	Chr9	16416512	Chr2	2673921
Translocation	Chr6	17681542	Chr2	27705251	2
Translocation	Chr12	20140083	Chr6	22179754	LOC_Os12g33300
Translocation	Chr8	22191140	Chr3	9225261	LOC_Os08g35190
Translocation	Chr8	22193007	Chr2	27705262	2
Translocation	Chr11	24451267	Chr2	28052150	LOC_Os11g40870

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