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Mutant Information

Mutant Name	FN2089-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2089-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15893469	T-C	HET
SBS	Chr1	19323682	T-C	HET
SBS	Chr1	20892700	C-T	HET
SBS	Chr1	25996937	T-C	Homo
SBS	Chr1	29494400	A-T	Homo
SBS	Chr1	35040895	G-C	Homo
SBS	Chr10	3100805	C-A	Homo
SBS	Chr11	15092255	C-A	HET
SBS	Chr11	16462423	T-C	HET
SBS	Chr11	22719738	G-A	HET
SBS	Chr11	25086777	G-T	HET
SBS	Chr11	28468659	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47320
SBS	Chr12	13311543	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g23520
SBS	Chr12	2204429	T-C	HET
SBS	Chr12	448279	G-A	HET
SBS	Chr2	31315082	G-A	HET
SBS	Chr2	8560780	C-T	HET
SBS	Chr2	8560948	A-T	HET
SBS	Chr3	29411070	G-A	HET
SBS	Chr3	6194949	T-C	HET
SBS	Chr4	11259112	C-T	Homo
SBS	Chr4	16100616	G-A	HET
SBS	Chr4	21633555	G-T	Homo
SBS	Chr4	27088290	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g45770
SBS	Chr4	5853086	C-A	Homo
SBS	Chr5	10316301	A-G	HET
SBS	Chr5	1666989	C-T	HET
SBS	Chr5	21483279	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36240
SBS	Chr5	25169985	C-A	HET
SBS	Chr6	5223549	T-C	Homo
SBS	Chr8	12011417	C-T	HET
SBS	Chr9	11071685	C-A	HET
SBS	Chr9	16880780	C-G	Homo
SBS	Chr9	22825450	C-T	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3521190	3521194	4
Deletion	Chr10	3870139	3870147	8
Deletion	Chr12	4133961	4133966	5	LOC_Os12g08110
Deletion	Chr6	7314100	7314187	87
Deletion	Chr1	7835369	7835370	1
Deletion	Chr6	7878629	7878631	2
Deletion	Chr10	9157727	9157728	1	LOC_Os10g18060
Deletion	Chr12	12752943	12752950	7
Deletion	Chr12	13248561	13248572	11
Deletion	Chr11	15112744	15112752	8
Deletion	Chr4	18731681	18731682	1
Deletion	Chr2	19469851	19469852	1
Deletion	Chr4	19945001	19964000	18999
Deletion	Chr10	20422939	20422943	4
Deletion	Chr3	21537178	21537179	1
Deletion	Chr7	22828228	22828229	1	LOC_Os07g38070
Deletion	Chr1	30925001	31006000	80999	12
Deletion	Chr1	39928941	39928951	10
Deletion	Chr1	40824285	40824286	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	15377266	15377266	1
Insertion	Chr10	2694374	2694377	4
Insertion	Chr11	27067876	27067876	1	LOC_Os11g44730
Insertion	Chr12	5511207	5511220	14
Insertion	Chr2	21110653	21110654	2
Insertion	Chr2	23009733	23009733	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5959093	6671248	2
Inversion	Chr1	10359970	10360445
Inversion	Chr5	14122529	14148000	2
Inversion	Chr5	14122624	14147999	2
Inversion	Chr9	15758890	15759098	LOC_Os09g26144
Inversion	Chr7	18876913	18877132
Inversion	Chr5	29066222	29069446	2
Inversion	Chr5	29066810	29069463	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2463696	Chr8	8709869	LOC_Os11g05480
Translocation	Chr12	9499638	Chr11	15465430
Translocation	Chr6	13890681	Chr5	12667012
Translocation	Chr6	18208123	Chr4	19200802

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