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Mutant Information

Mutant Name	FN2091-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2091-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16532109	C-T	HET
SBS	Chr1	18810718	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34140
SBS	Chr1	34457652	C-A	HET
SBS	Chr2	3198292	G-T	HET
SBS	Chr2	11189631	G-A	HET
SBS	Chr2	11903725	T-A	HET
SBS	Chr2	30584293	C-G	HET
SBS	Chr3	3391938	T-C	HET
SBS	Chr3	15099624	C-T	HET
SBS	Chr3	31844232	C-A	HET
SBS	Chr3	33682342	T-C	Homo
SBS	Chr3	36232485	G-C	Homo
SBS	Chr4	18075771	G-C	HET
SBS	Chr5	4477246	G-A	HET
SBS	Chr5	5652015	T-A	Homo
SBS	Chr5	5652016	T-A	Homo
SBS	Chr5	5652060	G-T	Homo
SBS	Chr5	6341043	C-T	Homo
SBS	Chr5	7875984	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14100
SBS	Chr5	11728280	G-A	HET
SBS	Chr5	25863315	G-T	HET
SBS	Chr6	8620211	T-A	HET
SBS	Chr6	14303570	G-A	Homo
SBS	Chr6	15404010	T-G	Homo
SBS	Chr6	24713079	C-T	HET
SBS	Chr8	16250490	A-C	HET
SBS	Chr8	22603829	C-T	HET
SBS	Chr8	27740012	T-C	HET
SBS	Chr9	10031258	G-A	HET	STOP_GAINED	LOC_Os09g16400
SBS	Chr10	12511563	G-A	HET
SBS	Chr10	18939685	A-G	HET
SBS	Chr10	22118239	G-T	HET
SBS	Chr11	2090465	G-A	HET
SBS	Chr11	12306429	G-A	HET
SBS	Chr11	13259231	C-T	HET
SBS	Chr11	21295364	T-A	HET
SBS	Chr12	8134000	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g14280
SBS	Chr12	19238409	T-C	HET
SBS	Chr12	20004164	C-T	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2749766	2749767	1	LOC_Os12g05970
Deletion	Chr11	3186018	3186023	5
Deletion	Chr3	5544001	5600000	55999	9
Deletion	Chr12	6859009	6859010	1
Deletion	Chr4	8796450	8796451	1	LOC_Os04g16200
Deletion	Chr8	9105698	9105704	6
Deletion	Chr12	9309081	9309082	1
Deletion	Chr5	9775635	9775638	3	LOC_Os05g17110
Deletion	Chr4	9824713	9824714	1	LOC_Os04g17880
Deletion	Chr9	11161921	11161944	23	LOC_Os09g18210
Deletion	Chr6	12657438	12657444	6
Deletion	Chr1	13635001	13690000	54999	9
Deletion	Chr1	13691001	13717000	25999	5
Deletion	Chr6	14305001	14385000	79999	12
Deletion	Chr11	14602721	14602730	9
Deletion	Chr10	14719507	14719513	6
Deletion	Chr5	18038658	18038662	4
Deletion	Chr11	21024699	21024701	2
Deletion	Chr3	36235333	36235335	2
Deletion	Chr1	37488954	37488956	2
Deletion	Chr1	38649300	38649301	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	29472664	29472665	2
Insertion	Chr9	16146205	16146218	14
Insertion	Chr10	18187624	18187624	1

Inversions: 13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7432461	7432591	LOC_Os01g13330
Inversion	Chr8	8981228	9474207
Inversion	Chr8	8981232	9474732
Inversion	Chr8	13390230	13390355
Inversion	Chr6	13824594	14385178
Inversion	Chr6	14400258	14400398
Inversion	Chr10	18662092	18662193	LOC_Os10g34970
Inversion	Chr7	19265943	19266404	LOC_Os07g32400
Inversion	Chr4	21069241	21069458
Inversion	Chr11	21412876	22027876	2
Inversion	Chr11	21412877	22027876	2
Inversion	Chr3	25288818	25289097
Inversion	Chr1	31523263	31523454

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	229497	Chr11	204242	LOC_Os12g01370
Translocation	Chr11	1111606	Chr1	24516348
Translocation	Chr11	1111607	Chr1	24516339
Translocation	Chr10	2469440	Chr4	679680	2
Translocation	Chr6	3033845	Chr3	8228323	2
Translocation	Chr3	11878381	Chr1	37612656	LOC_Os03g20940
Translocation	Chr3	11881884	Chr1	37612796
Translocation	Chr6	14305127	Chr3	11881867	LOC_Os06g24420
Translocation	Chr3	14720376	Chr2	24201916
Translocation	Chr3	14720377	Chr2	24200634	2
Translocation	Chr9	17421077	Chr1	36029808	2
Translocation	Chr6	24088199	Chr2	25837297

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