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Mutant Information

Mutant Name	FN2128-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2128-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17433812	G-T	HET
SBS	Chr1	2021787	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g04530
SBS	Chr1	6043006	G-A	HET
SBS	Chr10	10393832	C-T	HET
SBS	Chr10	13009113	C-A	HET
SBS	Chr10	2951840	G-A	HET
SBS	Chr10	846232	G-T	HET
SBS	Chr11	18051951	G-T	HET
SBS	Chr11	26664240	G-A	Homo
SBS	Chr12	10647413	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18400
SBS	Chr12	11023137	G-C	HET
SBS	Chr12	19746886	A-G	HET
SBS	Chr12	7746361	T-C	HET
SBS	Chr12	9041974	G-C	HET
SBS	Chr2	33485515	A-G	HET
SBS	Chr3	21482187	G-A	HET
SBS	Chr3	21928067	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39460
SBS	Chr3	21928069	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39460
SBS	Chr3	27075278	A-C	HET
SBS	Chr3	31869750	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g55990
SBS	Chr3	6951231	G-T	Homo
SBS	Chr4	10908930	C-A	Homo
SBS	Chr4	22961260	A-G	HET
SBS	Chr4	28183337	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47520
SBS	Chr4	5227345	G-C	Homo
SBS	Chr5	17892135	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30830
SBS	Chr5	1820140	C-G	Homo
SBS	Chr5	19648030	T-C	Homo
SBS	Chr5	23346919	G-T	Homo
SBS	Chr6	10851188	C-T	HET
SBS	Chr6	16481475	G-A	HET
SBS	Chr8	5303829	G-A	HET
SBS	Chr8	704588	C-A	Homo
SBS	Chr9	10519733	T-A	Homo
SBS	Chr9	13122373	C-T	Homo
SBS	Chr9	21350572	T-C	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1437763	1437764	1
Deletion	Chr12	2206001	2378000	171999	25
Deletion	Chr9	10025081	10025083	2
Deletion	Chr2	14607001	14731000	123999	15
Deletion	Chr2	14808001	15097000	288999	37
Deletion	Chr2	15148559	15148560	1
Deletion	Chr7	18597593	18597611	18
Deletion	Chr4	20209450	20209453	3
Deletion	Chr7	21219720	21219737	17
Deletion	Chr7	22655001	22716000	60999	9
Deletion	Chr10	22733338	22733343	5	LOC_Os10g42210
Deletion	Chr5	24882075	24882084	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	22440656	22440657	2
Insertion	Chr2	35735831	35735831	1	LOC_Os02g58430
Insertion	Chr3	31562328	31562328	1

Inversions: 22

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	440148	440392	LOC_Os01g01830
Inversion	Chr1	1299819	1300083
Inversion	Chr2	4715507	4715813	LOC_Os02g09170
Inversion	Chr5	5956570	5956867
Inversion	Chr6	8193641	8193958
Inversion	Chr7	9309368	9309684
Inversion	Chr6	11208180	11208366
Inversion	Chr9	16546254	16546493	LOC_Os09g27210
Inversion	Chr11	19228368	19228634	LOC_Os11g32580
Inversion	Chr3	19432933	19433296	LOC_Os03g34102
Inversion	Chr2	20972819	20972953	LOC_Os02g34970
Inversion	Chr4	23173430	23173530	LOC_Os04g39020
Inversion	Chr7	23603044	23603320	LOC_Os07g39400
Inversion	Chr11	23748391	23748529	LOC_Os11g39830
Inversion	Chr12	26148524	26148649
Inversion	Chr8	26734110	26734228
Inversion	Chr2	27490994	27491367	LOC_Os02g45250
Inversion	Chr2	27736951	27737203	LOC_Os02g45590
Inversion	Chr3	29655854	29656299
Inversion	Chr4	30032643	30032825
Inversion	Chr2	30594635	30594776	LOC_Os02g50100
Inversion	Chr2	34760050	34760776

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4452873	Chr2	30921386	2
Translocation	Chr11	7337713	Chr5	14772369	2
Translocation	Chr12	8605361	Chr8	15765065	2
Translocation	Chr7	16614601	Chr2	14774815	2
Translocation	Chr4	25989381	Chr2	26794085

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