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Mutant Information

Mutant Name	FN2152-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2152-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11222885	T-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os01g19770
SBS	Chr1	29835432	C-A	Homo
SBS	Chr1	34900164	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60330
SBS	Chr11	15979548	G-A	HET
SBS	Chr11	3282349	T-C	HET
SBS	Chr3	12433111	C-T	HET
SBS	Chr3	21449338	G-A	HET
SBS	Chr4	24712352	C-T	HET
SBS	Chr4	2898224	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05670
SBS	Chr5	11016069	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18980
SBS	Chr5	27171128	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46954
SBS	Chr6	24069430	A-C	Homo
SBS	Chr6	26660957	A-G	HET
SBS	Chr6	634635	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02130
SBS	Chr6	7179348	C-A	Homo
SBS	Chr7	14289804	G-A	HET
SBS	Chr7	21905176	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g36610
SBS	Chr7	6663831	C-T	HET
SBS	Chr8	12519489	T-G	Homo
SBS	Chr8	782223	A-G	Homo

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	378001	400000	21999	5
Deletion	Chr9	685001	706000	20999	5
Deletion	Chr8	781993	782010	17
Deletion	Chr8	1873001	1897000	23999	5
Deletion	Chr10	3545001	3617000	71999	10
Deletion	Chr4	6031001	6041000	9999	2
Deletion	Chr6	7102472	7102479	7
Deletion	Chr12	7124001	7168000	43999	5
Deletion	Chr6	8530001	8551000	20999	3
Deletion	Chr1	9032805	9032806	1
Deletion	Chr1	10631644	10631645	1
Deletion	Chr3	10719001	10743000	23999	3
Deletion	Chr12	11509869	11509870	1
Deletion	Chr11	12069463	12069464	1
Deletion	Chr8	13029536	13029543	7
Deletion	Chr10	13405001	13421000	15999	2
Deletion	Chr12	16938190	16938192	2	LOC_Os12g28650
Deletion	Chr7	18369001	18405000	35999	7
Deletion	Chr5	20750746	20750750	4	LOC_Os05g34920
Deletion	Chr5	21256368	21256369	1
Deletion	Chr9	22825001	22844000	18999	3
Deletion	Chr12	25692196	25692200	4
Deletion	Chr6	27175001	27198000	22999	3
Deletion	Chr3	28608197	28608199	2
Deletion	Chr3	32411001	32422000	10999	2
Deletion	Chr1	35792176	35792179	3	LOC_Os01g61860
Deletion	Chr1	41407001	41424000	16999	2

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23145025	23145025	1
Insertion	Chr1	27809054	27809054	1
Insertion	Chr10	9144888	9144888	1	LOC_Os10g18042
Insertion	Chr11	13493795	13493795	1
Insertion	Chr12	9229235	9229235	1
Insertion	Chr3	10745204	10745204	1
Insertion	Chr3	14126142	14126142	1
Insertion	Chr3	3222577	3222577	1
Insertion	Chr4	15320793	15320793	1
Insertion	Chr4	5447379	5447379	1
Insertion	Chr4	8143986	8144006	21
Insertion	Chr5	18369178	18369179	2
Insertion	Chr5	9483217	9483234	18	LOC_Os05g16680
Insertion	Chr7	12486198	12486199	2
Insertion	Chr7	15467387	15467387	1
Insertion	Chr7	17320556	17320556	1	LOC_Os07g29500
Insertion	Chr8	23298558	23298588	31
Insertion	Chr8	24362510	24362510	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8758810	8938868	2
Inversion	Chr9	9739410	9739675
Inversion	Chr12	16504747	16505102	LOC_Os12g27994
Inversion	Chr2	19073093	19073394
Inversion	Chr9	21371763	21372153	LOC_Os09g37050
Inversion	Chr1	25249683	25249953
Inversion	Chr3	31521165	31521417
Inversion	Chr4	32084501	32209635	2
Inversion	Chr2	32700585	32700704	LOC_Os02g53450

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4244184	Chr2	6526410
Translocation	Chr5	4954614	Chr4	857584
Translocation	Chr12	6215582	Chr2	1697509
Translocation	Chr12	9802786	Chr10	20738719
Translocation	Chr3	12858565	Chr2	27027477	2
Translocation	Chr10	12950318	Chr8	14202216
Translocation	Chr9	13150340	Chr4	13523968	2
Translocation	Chr9	13150371	Chr4	13439748
Translocation	Chr10	14180847	Chr1	26307386
Translocation	Chr11	14589444	Chr4	8131957	2
Translocation	Chr3	17136806	Chr2	24543571
Translocation	Chr5	18271869	Chr4	28907055
Translocation	Chr11	19220031	Chr9	8149217
Translocation	Chr8	19804265	Chr7	1870478	LOC_Os08g31940
Translocation	Chr5	20654989	Chr1	40847961	2
Translocation	Chr5	20669340	Chr1	40847958	2
Translocation	Chr11	22131407	Chr7	11905199
Translocation	Chr11	27827160	Chr6	25898014

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