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Mutant Information

Mutant Name	FN2157-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2157-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13850172	C-A	Homo
SBS	Chr10	1912240	G-A	HET
SBS	Chr11	18836550	C-T	Homo
SBS	Chr11	20386667	C-A	Homo
SBS	Chr11	28240714	G-A	Homo
SBS	Chr12	12068187	G-A	HET
SBS	Chr12	19421957	C-T	Homo
SBS	Chr12	1965598	A-G	HET
SBS	Chr12	9716659	T-A	HET
SBS	Chr2	19171304	A-G	HET
SBS	Chr2	32622731	G-A	HET
SBS	Chr3	6314468	C-T	HET
SBS	Chr3	6355800	G-A	HET
SBS	Chr4	20421661	A-G	Homo
SBS	Chr5	184081	G-A	Homo
SBS	Chr5	22949094	A-T	Homo	STOP_GAINED	LOC_Os05g39130
SBS	Chr6	12259604	C-G	HET
SBS	Chr6	12259608	C-T	HET
SBS	Chr6	6851803	C-G	HET
SBS	Chr7	13522317	T-A	HET
SBS	Chr7	22885158	T-G	HET
SBS	Chr7	27021735	A-G	HET
SBS	Chr8	10882041	T-C	HET
SBS	Chr8	16890726	T-A	HET
SBS	Chr8	24615413	G-T	HET
SBS	Chr8	24615414	A-T	HET
SBS	Chr8	5819444	A-T	HET
SBS	Chr9	20822657	C-T	HET

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	611133	611145	12
Deletion	Chr5	2105001	2124000	18999	2
Deletion	Chr7	2615001	2628000	12999	2
Deletion	Chr7	2825001	2882000	56999	7
Deletion	Chr8	5795001	5808000	12999	LOC_Os08g10020
Deletion	Chr8	5910928	5910938	10	LOC_Os08g10190
Deletion	Chr7	5983001	5996000	12999	2
Deletion	Chr1	6463001	6473000	9999	2
Deletion	Chr6	6650207	6650217	10
Deletion	Chr9	8516720	8516723	3
Deletion	Chr12	9278001	9292000	13999	4
Deletion	Chr1	9459968	9459984	16
Deletion	Chr1	10270725	10270727	2
Deletion	Chr11	10572591	10572592	1
Deletion	Chr8	11166774	11166775	1	LOC_Os08g18220
Deletion	Chr5	12557001	12580000	22999	2
Deletion	Chr4	13417001	13668000	250999	32
Deletion	Chr12	13509001	13528000	18999	3
Deletion	Chr11	13675632	13675633	1
Deletion	Chr11	14600982	14600983	1
Deletion	Chr5	14904708	14904709	1
Deletion	Chr9	15172001	15201000	28999	3
Deletion	Chr12	15239088	15239089	1
Deletion	Chr11	15818001	15840000	21999	4
Deletion	Chr9	17708001	17732000	23999	2
Deletion	Chr4	18346001	18361000	14999	2
Deletion	Chr9	20134001	20146000	11999	2
Deletion	Chr9	22466001	22499000	32999	4
Deletion	Chr9	22823001	22852000	28999	4
Deletion	Chr12	23741001	23765000	23999	4
Deletion	Chr6	24689001	24717000	27999	7
Deletion	Chr8	26854997	26855000	3
Deletion	Chr6	27100001	27116000	15999	LOC_Os06g44860
Deletion	Chr1	36505001	36526000	20999	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	18272074	18272074	1
Insertion	Chr1	37346415	37346417	3
Insertion	Chr11	7181664	7181664	1
Insertion	Chr4	22494396	22494396	1
Insertion	Chr6	8170442	8170447	6

Inversions: 35

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	455392	455740	LOC_Os05g01760
Inversion	Chr5	2623353	2623488	LOC_Os05g05320
Inversion	Chr2	3161019	3161381
Inversion	Chr1	3177992	3178388	LOC_Os01g06720
Inversion	Chr1	3352719	3353044	LOC_Os01g07110
Inversion	Chr1	4457184	4457404
Inversion	Chr2	6668299	6668652
Inversion	Chr9	8038696	8038822
Inversion	Chr12	9166738	9167218
Inversion	Chr5	11006968	11007541
Inversion	Chr2	11578163	11578539	2
Inversion	Chr8	11708086	11708374	LOC_Os08g19590
Inversion	Chr9	12018937	12019167
Inversion	Chr1	12497700	12497885
Inversion	Chr10	13402131	13552387	LOC_Os10g25850
Inversion	Chr7	13491146	13491384	LOC_Os07g23880
Inversion	Chr5	17360964	17361343
Inversion	Chr7	18670041	18692960
Inversion	Chr7	18674261	18692961
Inversion	Chr3	18687312	18687711	LOC_Os03g32630
Inversion	Chr8	20158543	20158819	LOC_Os08g32540
Inversion	Chr3	20216759	20216920	LOC_Os03g36500
Inversion	Chr11	20548021	20548362
Inversion	Chr4	20652825	20653140
Inversion	Chr4	22348224	22348493	LOC_Os04g37550
Inversion	Chr10	22444845	22449576
Inversion	Chr4	23113166	23679155	2
Inversion	Chr8	23697578	24109768	2
Inversion	Chr11	26412323	26412646
Inversion	Chr2	27058309	27058706	LOC_Os02g44642
Inversion	Chr7	27549416	27549600	LOC_Os07g46160
Inversion	Chr3	27608362	27608549
Inversion	Chr3	31298039	31298574
Inversion	Chr4	31586459	31586728	2
Inversion	Chr4	34440284	34440514	LOC_Os04g57840

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2466352	Chr6	30778799	2
Translocation	Chr12	2466359	Chr6	30778800	2
Translocation	Chr7	4450793	Chr6	30983134
Translocation	Chr10	4614010	Chr6	10862726	LOC_Os10g08510
Translocation	Chr12	8680183	Chr11	27722254
Translocation	Chr9	12526326	Chr2	35903250	2
Translocation	Chr9	12531575	Chr2	35903231	2
Translocation	Chr11	13220749	Chr5	29713108
Translocation	Chr3	13646418	Chr1	33549357
Translocation	Chr11	28429707	Chr3	16633154
Translocation	Chr11	28467263	Chr8	23697565	LOC_Os11g47320

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