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Mutant Information

Mutant Name	FN2158-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2158-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34101664	G-A	HET
SBS	Chr1	35406600	C-T	HET
SBS	Chr10	2389924	G-A	HET
SBS	Chr10	255364	A-G	HET
SBS	Chr11	17208615	G-A	Homo
SBS	Chr11	6054772	C-T	HET
SBS	Chr2	11970751	T-A	HET
SBS	Chr2	17259792	C-A	Homo
SBS	Chr2	31095157	T-A	Homo
SBS	Chr3	16476688	C-G	HET
SBS	Chr3	19869828	G-C	Homo
SBS	Chr3	21466625	C-T	Homo
SBS	Chr4	12751281	G-A	HET
SBS	Chr4	14779186	G-A	Homo
SBS	Chr4	18282774	C-A	Homo
SBS	Chr4	22612673	A-C	HET
SBS	Chr4	30554941	A-G	HET
SBS	Chr4	4381715	T-C	HET
SBS	Chr6	13733513	C-T	HET
SBS	Chr6	2564679	A-G	Homo
SBS	Chr6	7365604	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g13370
SBS	Chr7	26806106	A-T	Homo
SBS	Chr7	5591083	T-C	HET
SBS	Chr8	13109532	C-G	HET
SBS	Chr9	11212401	G-A	HET
SBS	Chr9	15250432	G-A	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	156665	156668	3
Deletion	Chr1	1095001	1126000	30999	4
Deletion	Chr6	3725495	3725507	12
Deletion	Chr2	4322408	4322410	2
Deletion	Chr3	5426803	5426807	4
Deletion	Chr6	7075397	7075416	19
Deletion	Chr2	12274884	12274886	2
Deletion	Chr11	12993001	13307000	313999	52
Deletion	Chr2	15733944	15733945	1
Deletion	Chr2	17572601	17572603	2
Deletion	Chr12	19893493	19893499	6
Deletion	Chr9	20219800	20219805	5
Deletion	Chr3	20511139	20511141	2
Deletion	Chr11	20852786	20852787	1	LOC_Os11g35560

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22767910	22767910	1
Insertion	Chr2	4958981	4958983	3	LOC_Os02g09650
Insertion	Chr4	29937	29938	2
Insertion	Chr8	17910649	17910654	6
Insertion	Chr8	6014317	6014318	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	20488788	20488889	LOC_Os03g36920
Inversion	Chr3	27536834	27537291	LOC_Os03g48370

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	547849	Chr4	33645890	2
Translocation	Chr11	2501828	Chr3	13989883	2
Translocation	Chr10	8660447	Chr3	24075323
Translocation	Chr5	21233365	Chr2	25806919	2
Translocation	Chr5	21233761	Chr2	25806925	2
Translocation	Chr12	22488069	Chr4	33646660	2

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