Search Results

Mutant Information

Mutant Name	FN2160-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2160-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22262943	G-A	Homo
SBS	Chr1	22306112	C-T	HET
SBS	Chr1	23371690	G-A	HET
SBS	Chr1	24036545	C-A	HET
SBS	Chr1	29749727	C-G	HET
SBS	Chr2	6940877	C-T	Homo
SBS	Chr2	11290643	C-G	Homo
SBS	Chr2	18355254	C-T	Homo
SBS	Chr2	18355255	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g30800
SBS	Chr2	21980392	G-A	HET
SBS	Chr2	23454751	A-T	HET
SBS	Chr2	25019000	G-A	HET
SBS	Chr3	6781707	A-G	HET
SBS	Chr3	14652616	C-T	HET
SBS	Chr3	29546045	T-C	HET
SBS	Chr3	32935958	A-T	HET
SBS	Chr4	1398712	G-T	HET
SBS	Chr4	6290899	G-A	HET
SBS	Chr4	9434623	G-T	HET
SBS	Chr4	13065631	C-T	HET
SBS	Chr4	20999051	C-T	HET
SBS	Chr4	22285589	G-A	HET
SBS	Chr5	4037405	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07540
SBS	Chr5	17103577	C-T	Homo
SBS	Chr5	18042391	G-A	HET
SBS	Chr5	22848184	C-T	Homo
SBS	Chr6	2147047	T-A	HET
SBS	Chr6	12994253	C-T	Homo
SBS	Chr6	17335323	C-T	Homo
SBS	Chr6	22289129	G-A	Homo
SBS	Chr6	24235892	T-A	Homo
SBS	Chr6	24747880	C-A	Homo
SBS	Chr7	17073331	G-A	HET
SBS	Chr7	24632813	T-C	HET
SBS	Chr7	27237210	G-A	HET
SBS	Chr7	28020146	G-A	HET
SBS	Chr8	11423935	C-T	HET
SBS	Chr8	14215646	G-A	Homo
SBS	Chr9	4139258	T-C	HET
SBS	Chr9	12491911	G-C	Homo
SBS	Chr10	3801454	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07229
SBS	Chr10	13064938	C-T	HET
SBS	Chr10	16029807	C-A	Homo
SBS	Chr11	14800035	G-A	HET
SBS	Chr11	17957926	C-A	HET
SBS	Chr11	18850397	G-A	Homo
SBS	Chr12	22432770	A-T	Homo

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2018142	2018145	3	LOC_Os03g04390
Deletion	Chr5	2762250	2762416	166
Deletion	Chr7	6650591	6650592	1
Deletion	Chr7	9960695	9960696	1
Deletion	Chr2	13222730	13222733	3
Deletion	Chr10	14749988	14749989	1
Deletion	Chr10	18374404	18374413	9
Deletion	Chr3	19728688	19728691	3
Deletion	Chr5	25882940	25882942	2

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15780243	15780244	2
Insertion	Chr6	24414618	24414619	2
Insertion	Chr7	25931643	25931644	2
Insertion	Chr1	15881505	15881505	1	LOC_Os01g28350
Insertion	Chr1	22509968	22509969	2
Insertion	Chr2	23352921	23352921	1
Insertion	Chr8	8901349	8901350	2
Insertion	Chr10	3211207	3211207	1
Insertion	Chr12	13719982	13719982	1

Inversions: 43

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	541300	541498	LOC_Os01g02000
Inversion	Chr3	923725	924032	LOC_Os03g02514
Inversion	Chr5	1536064	1536376	LOC_Os05g03610
Inversion	Chr9	1897596	1897843	LOC_Os09g03750
Inversion	Chr11	2402770	2402951
Inversion	Chr6	3140732	3141066
Inversion	Chr8	4144676	4144791
Inversion	Chr7	5150057	5150279
Inversion	Chr8	8255137	8255340
Inversion	Chr3	8436641	8437126	LOC_Os03g15420
Inversion	Chr1	9207966	9208182	LOC_Os01g16260
Inversion	Chr6	9380536	9380731
Inversion	Chr2	9710399	9711036
Inversion	Chr8	10857834	10858060
Inversion	Chr9	11965162	11965539
Inversion	Chr8	12394830	12395178	2
Inversion	Chr3	12582981	12583107
Inversion	Chr1	12752121	12752417	LOC_Os01g22680
Inversion	Chr9	13556519	13556800	LOC_Os09g22440
Inversion	Chr3	14190196	14190484	LOC_Os03g24910
Inversion	Chr2	16338960	16339119	LOC_Os02g27590
Inversion	Chr11	17619319	17619852
Inversion	Chr1	17983240	17983470
Inversion	Chr9	18549694	18550055
Inversion	Chr12	19759660	19816054	2
Inversion	Chr12	19759669	19816063	2
Inversion	Chr1	20990386	20990605	LOC_Os01g37560
Inversion	Chr11	21082693	21083093
Inversion	Chr4	23000485	23000706
Inversion	Chr6	23775959	23776262	LOC_Os06g39960
Inversion	Chr4	24578262	24578551
Inversion	Chr3	24621669	24622159	LOC_Os03g43890
Inversion	Chr1	24841574	24841754	LOC_Os01g43410
Inversion	Chr2	25044510	25044667
Inversion	Chr4	26039022	26039400	LOC_Os04g43922
Inversion	Chr11	26940884	26941044	LOC_Os11g44560
Inversion	Chr11	27366401	27366610
Inversion	Chr7	29132076	29132225	LOC_Os07g48650
Inversion	Chr4	29535328	29535894	LOC_Os04g49510
Inversion	Chr2	31104365	31104489
Inversion	Chr4	31253712	31254024	LOC_Os04g52560
Inversion	Chr4	34659152	34659382
Inversion	Chr1	38494259	38494582

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	610558	Chr2	23232074	LOC_Os12g02050
Translocation	Chr8	856576	Chr5	20470806	LOC_Os08g02300
Translocation	Chr8	856578	Chr5	20470805	LOC_Os08g02300
Translocation	Chr9	906380	Chr2	18422078
Translocation	Chr3	7281128	Chr1	13356190	2
Translocation	Chr6	19422737	Chr1	25610077
Translocation	Chr6	19426526	Chr1	25612151
Translocation	Chr9	20294565	Chr4	10955034
Translocation	Chr8	20919948	Chr3	7281126	2
Translocation	Chr8	20922638	Chr3	7281125	2
Translocation	Chr12	26995546	Chr2	10940032	2

Main menu

You are here

Search Results