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Mutant Information

Mutant Name	FN2166-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2166-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23038029	A-T	Homo
SBS	Chr1	24637362	G-A	HET
SBS	Chr1	26224609	A-G	HET
SBS	Chr1	30298239	T-C	Homo
SBS	Chr1	38092381	T-C	HET
SBS	Chr1	41937742	T-C	HET
SBS	Chr1	7019838	T-A	HET
SBS	Chr10	8944938	T-C	HET
SBS	Chr11	19305168	A-T	Homo
SBS	Chr11	2087410	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g04894
SBS	Chr11	2087414	G-C	HET
SBS	Chr11	25507958	C-T	HET
SBS	Chr11	6469086	T-A	Homo
SBS	Chr12	23335812	C-T	HET
SBS	Chr12	6545635	T-C	HET
SBS	Chr2	12537487	C-T	Homo
SBS	Chr2	2175584	G-A	HET
SBS	Chr2	33299792	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g54300
SBS	Chr2	414216	G-T	HET
SBS	Chr2	414217	A-T	HET
SBS	Chr3	11854228	G-A	HET
SBS	Chr3	1556797	A-T	HET
SBS	Chr3	21370545	G-A	HET
SBS	Chr3	24242482	C-T	HET
SBS	Chr3	28816969	T-C	HET
SBS	Chr3	29051881	G-C	HET
SBS	Chr3	31165513	T-A	HET
SBS	Chr3	8112683	G-A	HET
SBS	Chr4	1277505	T-C	HET
SBS	Chr4	14586968	T-C	Homo
SBS	Chr4	25108756	C-T	HET
SBS	Chr4	34248074	C-T	HET
SBS	Chr4	35264914	C-T	HET
SBS	Chr4	4649084	A-T	HET
SBS	Chr5	11812573	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20180
SBS	Chr5	14194641	C-A	HET
SBS	Chr5	15271549	T-A	HET
SBS	Chr5	17731024	G-A	HET
SBS	Chr5	21520933	T-C	HET
SBS	Chr5	9836368	G-A	HET
SBS	Chr6	1146163	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g03110
SBS	Chr6	1146164	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g03110
SBS	Chr6	26569036	A-G	Homo
SBS	Chr6	2866718	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g06190
SBS	Chr7	12960621	C-A	HET
SBS	Chr7	3753480	G-A	HET
SBS	Chr8	16045578	C-A	HET
SBS	Chr8	18839687	G-A	HET
SBS	Chr8	21995868	T-A	HET
SBS	Chr8	22247717	A-T	HET
SBS	Chr8	22247719	G-T	HET
SBS	Chr8	5506033	C-G	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1454001	1510000	55999	11
Deletion	Chr4	1514001	1577000	62999	7
Deletion	Chr4	1590001	1807000	216999	31
Deletion	Chr9	11243501	11243502	1
Deletion	Chr9	11332386	11332388	2
Deletion	Chr6	12434849	12434853	4	LOC_Os06g21560
Deletion	Chr2	12531434	12531441	7
Deletion	Chr7	17108965	17109080	115
Deletion	Chr1	17165437	17165449	12
Deletion	Chr7	19004562	19004563	1
Deletion	Chr4	19724764	19724765	1	LOC_Os04g32720
Deletion	Chr2	21353744	21353745	1
Deletion	Chr1	23973902	23973903	1
Deletion	Chr6	24517360	24517362	2	LOC_Os06g41050
Deletion	Chr7	26024302	26024303	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14946944	14946946	3
Insertion	Chr2	25847793	25847794	2
Insertion	Chr5	5266970	5266971	2
Insertion	Chr6	22495131	22495149	19

Inversions: 38

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	62940	63208	LOC_Os05g01030
Inversion	Chr9	457233	457412	LOC_Os09g01640
Inversion	Chr4	1604550	1604840
Inversion	Chr5	2350173	2350507
Inversion	Chr6	2555191	2555330
Inversion	Chr4	3211404	3211680
Inversion	Chr9	5070002	5070148
Inversion	Chr8	6536435	6536561	LOC_Os08g11110
Inversion	Chr12	7640010	7640219	LOC_Os12g13590
Inversion	Chr1	9005130	9005303	LOC_Os01g16000
Inversion	Chr3	10656802	10656935
Inversion	Chr1	11278945	11279147
Inversion	Chr5	12288221	12288556
Inversion	Chr12	14452973	14453285	2
Inversion	Chr10	14929288	14929440	LOC_Os10g28640
Inversion	Chr8	15462744	15596597	2
Inversion	Chr8	15462759	15596597	2
Inversion	Chr1	18299015	18299201	LOC_Os01g33230
Inversion	Chr10	20792513	20792750	LOC_Os10g39010
Inversion	Chr1	21352667	21352796
Inversion	Chr12	22174310	22174487	LOC_Os12g36180
Inversion	Chr5	22236578	22236704
Inversion	Chr4	22279901	22280086
Inversion	Chr8	22369139	22369317
Inversion	Chr10	22435425	22435531	LOC_Os10g41660
Inversion	Chr2	22533845	22534081
Inversion	Chr8	22816298	22816631
Inversion	Chr6	23334923	23335081	LOC_Os06g39330
Inversion	Chr5	24155553	24155893	LOC_Os05g41240
Inversion	Chr1	25405860	25406018
Inversion	Chr8	25614818	25615124	LOC_Os08g40490
Inversion	Chr6	26499155	26566948
Inversion	Chr6	26499165	26566952
Inversion	Chr3	28791267	28791681
Inversion	Chr2	29204935	29205217
Inversion	Chr2	29611853	29612199	LOC_Os02g48370
Inversion	Chr1	34941276	35366085	2
Inversion	Chr1	35366097	35721717	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2785663	Chr8	4650014	2
Translocation	Chr8	4650007	Chr2	21197285	LOC_Os08g08170
Translocation	Chr11	8192984	Chr4	13912171
Translocation	Chr10	9076083	Chr4	2768659
Translocation	Chr8	12652116	Chr4	4434857
Translocation	Chr8	12662666	Chr4	4434843	LOC_Os08g21210
Translocation	Chr10	18851560	Chr4	34078966
Translocation	Chr10	18851568	Chr4	34071875
Translocation	Chr2	19183034	Chr1	37115681
Translocation	Chr8	19686890	Chr6	13719896	2
Translocation	Chr6	23462865	Chr3	32007061	LOC_Os06g39515

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