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Mutant Information

Mutant Name	FN2196-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2196-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25171583	G-A	HET
SBS	Chr1	29587425	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51480
SBS	Chr1	32221477	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g55940
SBS	Chr1	32221478	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g55940
SBS	Chr1	6364507	T-A	Homo
SBS	Chr10	10391657	T-A	HET
SBS	Chr10	11497556	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22220
SBS	Chr10	16926941	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g32240
SBS	Chr10	4079121	T-A	Homo
SBS	Chr10	4079122	G-A	Homo
SBS	Chr10	5978569	T-A	HET
SBS	Chr10	6486970	C-A	HET
SBS	Chr10	9238880	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18190
SBS	Chr11	17748869	C-T	HET
SBS	Chr11	17790171	T-C	HET
SBS	Chr11	21620269	C-A	HET
SBS	Chr11	21620270	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36640
SBS	Chr2	1187817	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g03020
SBS	Chr2	15208476	G-A	HET
SBS	Chr2	35816681	T-A	HET
SBS	Chr2	5062641	A-T	HET
SBS	Chr2	8793772	C-T	HET
SBS	Chr3	17303087	A-T	HET
SBS	Chr3	21929921	A-C	HET
SBS	Chr3	28096542	A-T	HET
SBS	Chr3	30994779	C-T	HET
SBS	Chr3	4068329	G-A	HET
SBS	Chr4	18124292	G-C	HET
SBS	Chr4	26669462	C-T	Homo
SBS	Chr4	27954050	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g47080
SBS	Chr4	27954051	C-T	Homo
SBS	Chr4	30452082	T-C	HET
SBS	Chr4	34189673	C-A	Homo
SBS	Chr4	3856703	C-T	Homo
SBS	Chr4	6286717	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11500
SBS	Chr4	7184908	C-T	HET
SBS	Chr5	17487775	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g30170
SBS	Chr5	20601081	A-T	HET
SBS	Chr5	29302060	A-G	Homo
SBS	Chr6	27560137	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g45540
SBS	Chr6	8423069	T-A	Homo
SBS	Chr6	8593654	G-A	Homo
SBS	Chr7	18411595	A-G	Homo
SBS	Chr7	23487335	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39230
SBS	Chr7	24956842	C-T	HET
SBS	Chr7	9766931	C-T	Homo
SBS	Chr8	8402517	G-A	HET
SBS	Chr9	19088260	T-A	HET

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	475001	677000	201999	33
Deletion	Chr3	741831	741838	7
Deletion	Chr5	6670092	6670096	4
Deletion	Chr5	6988359	6988360	1
Deletion	Chr5	8601605	8601606	1
Deletion	Chr6	11649304	11649310	6
Deletion	Chr9	11757001	11857000	99999	11
Deletion	Chr9	11862001	11946000	83999	14
Deletion	Chr9	11951001	11967000	15999	5
Deletion	Chr9	11974001	12183000	208999	31
Deletion	Chr6	12235889	12235890	1	LOC_Os06g21170
Deletion	Chr9	12548925	12548929	4
Deletion	Chr6	13264184	13264188	4
Deletion	Chr3	14107086	14107088	2
Deletion	Chr3	14968565	14968579	14
Deletion	Chr6	15092001	15138000	45999	5
Deletion	Chr6	15142001	15166000	23999	3
Deletion	Chr1	16999239	16999243	4	LOC_Os01g31090
Deletion	Chr7	19358211	19358213	2
Deletion	Chr3	22596283	22596284	1
Deletion	Chr10	23040190	23040191	1
Deletion	Chr4	25597439	25597447	8
Deletion	Chr7	28978785	28978789	4
Deletion	Chr1	29384079	29384085	6	LOC_Os01g51140
Deletion	Chr2	30027405	30027417	12
Deletion	Chr1	38613786	38613788	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29926067	29926073	7
Insertion	Chr5	23858409	23858412	4
Insertion	Chr6	25426205	25426206	2
Insertion	Chr7	25931643	25931644	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3821817	3822077	LOC_Os03g07510
Inversion	Chr6	14841610	15092414
Inversion	Chr6	14842896	15169399	LOC_Os06g25340
Inversion	Chr5	21185529	21229376	LOC_Os05g35650
Inversion	Chr5	21185537	21229376	LOC_Os05g35650
Inversion	Chr5	24339404	24411688	2
Inversion	Chr5	24339453	24411693	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	676044	Chr3	28445994
Translocation	Chr10	676729	Chr9	12133652	2
Translocation	Chr12	7498166	Chr7	13571127	LOC_Os12g13400
Translocation	Chr9	12132382	Chr4	33608212
Translocation	Chr9	12133648	Chr4	33607599	LOC_Os09g20250
Translocation	Chr9	12134682	Chr3	28086646	2
Translocation	Chr8	15383527	Chr4	7447945	LOC_Os08g25300

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