Search Results

Mutant Information

Mutant Name	FN2217-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2217-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17081728	C-A	HET
SBS	Chr1	40902005	T-A	Homo
SBS	Chr2	8962441	A-T	HET
SBS	Chr2	8962450	T-A	HET
SBS	Chr2	23199752	G-A	HET
SBS	Chr2	30515285	A-G	HET
SBS	Chr3	17342795	C-T	Homo
SBS	Chr3	31044365	A-G	HET
SBS	Chr4	3892636	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g07320
SBS	Chr4	8103097	G-A	HET
SBS	Chr4	25942517	C-T	HET
SBS	Chr5	5653149	G-A	HET
SBS	Chr5	10379813	C-A	HET
SBS	Chr5	18486147	C-T	HET
SBS	Chr5	22556297	A-G	HET
SBS	Chr6	2701239	T-A	Homo
SBS	Chr6	17364138	G-A	HET
SBS	Chr7	5557176	T-C	HET
SBS	Chr7	22995699	G-T	HET
SBS	Chr8	463774	C-A	HET	STOP_GAINED	LOC_Os08g01770
SBS	Chr8	24637966	T-G	HET
SBS	Chr8	25557963	A-T	HET
SBS	Chr9	232593	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01270
SBS	Chr9	12795658	C-A	HET
SBS	Chr9	15865712	G-T	Homo
SBS	Chr10	7910050	G-A	HET
SBS	Chr10	12286357	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g23950
SBS	Chr10	18529944	G-A	HET
SBS	Chr10	21726403	A-G	Homo
SBS	Chr11	268355	G-T	Homo
SBS	Chr11	358812	G-A	HET
SBS	Chr11	899375	A-G	HET
SBS	Chr11	4272426	C-T	Homo
SBS	Chr11	9541141	A-T	HET
SBS	Chr11	13603700	C-A	HET
SBS	Chr11	13603701	G-A	HET
SBS	Chr11	16463578	C-T	Homo
SBS	Chr12	19324311	T-A	HET
SBS	Chr12	21031526	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g34650

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1953728	1953729	1
Deletion	Chr8	2861746	2861770	24	LOC_Os08g05420
Deletion	Chr4	3883421	3883427	6
Deletion	Chr5	7264824	7264844	20
Deletion	Chr12	9106956	9106958	2
Deletion	Chr12	12029895	12029896	1
Deletion	Chr6	12151612	12151613	1	LOC_Os06g21030
Deletion	Chr6	12545870	12545871	1	LOC_Os06g21700
Deletion	Chr11	12604001	12814000	209999	42
Deletion	Chr7	12938685	12938687	2	LOC_Os07g22960
Deletion	Chr3	13362876	13362877	1	LOC_Os03g23110
Deletion	Chr9	14858192	14858197	5
Deletion	Chr9	15983387	15983392	5
Deletion	Chr9	16812922	16812926	4
Deletion	Chr8	17088052	17088058	6
Deletion	Chr9	22367107	22367109	2
Deletion	Chr11	22392417	22392418	1
Deletion	Chr11	26027001	26065000	37999	7
Deletion	Chr12	26393472	26393473	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	25918777	25918777	1
Insertion	Chr7	27613461	27613462	2
Insertion	Chr9	223262	223262	1	LOC_Os09g01260

No Inversion

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5743805	Chr5	14533917
Translocation	Chr5	12286966	Chr3	35560973	2
Translocation	Chr5	12287260	Chr3	35560978	2
Translocation	Chr11	12810887	Chr5	8349182
Translocation	Chr11	13434998	Chr2	8032395
Translocation	Chr10	16049805	Chr9	376717
Translocation	Chr9	18370188	Chr8	2960408
Translocation	Chr6	23608201	Chr2	20852142

Main menu