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Mutant Information

Mutant Name	FN2261-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2261-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12270135	G-A	HET	STOP_GAINED	LOC_Os01g21870
SBS	Chr1	37613657	G-T	HET
SBS	Chr1	40906064	A-G	HET
SBS	Chr10	12594051	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24540
SBS	Chr10	16057586	T-C	HET
SBS	Chr11	1829593	G-A	HET
SBS	Chr12	10398967	A-G	Homo
SBS	Chr12	13226471	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23374
SBS	Chr12	17942171	A-G	Homo
SBS	Chr12	20335437	T-A	HET
SBS	Chr12	26251806	A-G	HET
SBS	Chr12	7776666	C-T	HET
SBS	Chr2	22000307	T-C	HET
SBS	Chr2	26109426	C-T	Homo
SBS	Chr2	6943497	T-C	HET
SBS	Chr3	11592898	A-C	Homo
SBS	Chr3	15775735	G-T	HET
SBS	Chr3	35788386	G-A	HET
SBS	Chr3	5455879	G-T	HET
SBS	Chr4	13888214	G-A	Homo
SBS	Chr4	27441010	G-T	HET
SBS	Chr4	30520708	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51520
SBS	Chr5	18746217	G-A	HET
SBS	Chr5	24802386	G-A	HET
SBS	Chr5	28162447	T-A	Homo
SBS	Chr5	28219216	C-T	HET
SBS	Chr6	21903887	C-A	Homo
SBS	Chr7	9896984	G-A	Homo
SBS	Chr8	12135624	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20220
SBS	Chr8	12440875	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20700
SBS	Chr8	17936246	A-T	HET
SBS	Chr8	26965948	G-A	Homo
SBS	Chr8	8359394	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr9	11031372	C-T	HET
SBS	Chr9	17927308	A-G	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	104399	104400	1
Deletion	Chr12	2884418	2884419	1
Deletion	Chr1	3190274	3190280	6
Deletion	Chr11	4794341	4794343	2
Deletion	Chr5	5608378	5608386	8
Deletion	Chr3	6163756	6163776	20
Deletion	Chr10	6927113	6927202	89	LOC_Os10g12450
Deletion	Chr7	9897014	9897017	3
Deletion	Chr7	16427001	16449000	21999	4
Deletion	Chr7	16450001	16484000	33999	6
Deletion	Chr7	16671001	16971000	299999	47
Deletion	Chr5	16733296	16733304	8
Deletion	Chr8	17134730	17134732	2
Deletion	Chr1	18496044	18496046	2
Deletion	Chr8	19020673	19020677	4
Deletion	Chr4	19315220	19315230	10	LOC_Os04g32220
Deletion	Chr1	20492104	20492105	1
Deletion	Chr12	20923807	20923808	1
Deletion	Chr9	21613564	21613565	1
Deletion	Chr5	22674086	22674105	19
Deletion	Chr3	22893988	22893989	1	LOC_Os03g41170
Deletion	Chr3	29562610	29562621	11
Deletion	Chr5	29753370	29753378	8
Deletion	Chr4	30059354	30059372	18	LOC_Os04g50810

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	15364715	15364715	1	LOC_Os12g26320
Insertion	Chr3	13604221	13604222	2
Insertion	Chr4	31887631	31887631	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	11307386	Chr6	22141205
Translocation	Chr7	16928313	Chr4	6466726
Translocation	Chr4	31558428	Chr3	34149121

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