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Mutant Information

Mutant Name	FN2274-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2274-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 51

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14308741	T-C	HET
SBS	Chr1	27157074	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g47510
SBS	Chr1	34072195	G-A	HET
SBS	Chr1	35076680	G-A	HET
SBS	Chr1	40685653	T-A	Homo
SBS	Chr1	41568831	G-T	HET
SBS	Chr1	41728049	G-A	HET
SBS	Chr1	9716014	C-G	HET
SBS	Chr10	11458867	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g22164
SBS	Chr10	17421836	T-C	HET
SBS	Chr10	17769049	A-G	HET
SBS	Chr10	17769196	T-G	HET
SBS	Chr10	5486005	T-A	Homo
SBS	Chr10	5627772	G-A	HET
SBS	Chr11	20370010	T-A	Homo
SBS	Chr12	14668462	C-T	HET
SBS	Chr12	2270893	G-A	HET
SBS	Chr12	47560	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g01090
SBS	Chr12	506079	C-T	HET
SBS	Chr12	7789171	C-T	HET
SBS	Chr2	11736824	A-G	HET
SBS	Chr2	17198258	A-T	HET
SBS	Chr2	23147050	C-T	HET
SBS	Chr2	27832725	G-A	HET
SBS	Chr2	34569832	G-A	Homo
SBS	Chr2	5825965	A-G	HET
SBS	Chr3	25277321	C-A	HET
SBS	Chr3	25277322	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44820
SBS	Chr3	4417197	T-C	Homo	SPLICE_SITE_DONOR	LOC_Os03g08580
SBS	Chr3	8439732	T-C	HET
SBS	Chr3	9357165	G-A	Homo
SBS	Chr4	15346902	G-C	HET
SBS	Chr4	1538725	C-T	Homo
SBS	Chr4	15548564	T-A	HET
SBS	Chr4	7676544	C-T	HET
SBS	Chr5	21064383	A-G	HET
SBS	Chr5	28255715	G-C	HET
SBS	Chr5	5598503	C-T	HET
SBS	Chr5	7862297	A-T	Homo
SBS	Chr6	10213883	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g17600
SBS	Chr6	10213884	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g17600
SBS	Chr6	11367176	G-C	Homo
SBS	Chr6	23825898	G-A	HET
SBS	Chr7	10402257	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17610
SBS	Chr7	10413177	G-T	HET
SBS	Chr7	17571023	A-T	HET
SBS	Chr8	13109746	T-C	HET
SBS	Chr8	14911077	G-A	HET
SBS	Chr8	20901584	G-A	HET
SBS	Chr8	3701036	A-T	Homo
SBS	Chr9	15433984	A-G	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1487284	1487285	1
Deletion	Chr10	2161262	2161265	3
Deletion	Chr5	2253871	2253881	10	LOC_Os05g04760
Deletion	Chr8	2818922	2818924	2
Deletion	Chr9	3409287	3409289	2
Deletion	Chr8	4016292	4016302	10
Deletion	Chr1	4448250	4448254	4
Deletion	Chr8	4480183	4480187	4
Deletion	Chr2	6824165	6824167	2
Deletion	Chr10	9625833	9625835	2
Deletion	Chr3	11041306	11041310	4
Deletion	Chr3	12272208	12272209	1
Deletion	Chr3	13841597	13841606	9	LOC_Os03g24339
Deletion	Chr10	14962123	14962125	2	LOC_Os10g28680
Deletion	Chr4	15866142	15866143	1
Deletion	Chr10	16709703	16709747	44
Deletion	Chr3	20543498	20543508	10
Deletion	Chr6	21695000	21695001	1
Deletion	Chr11	24168436	24168441	5
Deletion	Chr6	25465865	25465887	22
Deletion	Chr2	26774530	26774535	5
Deletion	Chr1	29596001	29605000	8999	2
Deletion	Chr6	30141157	30141166	9
Deletion	Chr1	42137413	42137418	5
Deletion	Chr1	42166637	42166639	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	17546054	17546055	2
Insertion	Chr8	5130577	5130578	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21930722	22261288	2
Inversion	Chr2	28701309	28995921	2
Inversion	Chr2	28995922	29348217	2
Inversion	Chr1	29595676	30461571	2
Inversion	Chr1	29604731	30461578	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	728626	Chr2	13225538	2
Translocation	Chr8	3463065	Chr7	16953256	2
Translocation	Chr12	24587182	Chr6	19795359	2

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