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Mutant Information

Mutant Name	FN2275-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2275-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2557267	T-C	HET
SBS	Chr10	16849900	C-T	HET
SBS	Chr10	19807880	G-T	HET
SBS	Chr10	6082314	A-T	HET
SBS	Chr10	6176012	G-T	HET
SBS	Chr10	8391705	A-T	HET
SBS	Chr10	9539422	G-A	HET
SBS	Chr10	9679536	T-A	HET
SBS	Chr11	11644498	T-A	HET
SBS	Chr11	14261627	G-A	HET
SBS	Chr11	3937732	G-A	HET
SBS	Chr11	5821433	G-A	Homo
SBS	Chr12	10800352	T-C	HET
SBS	Chr12	16771263	G-C	Homo
SBS	Chr2	10980386	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18820
SBS	Chr2	15008774	T-A	HET
SBS	Chr2	15009193	C-A	HET
SBS	Chr2	15009194	G-A	HET
SBS	Chr2	15009195	C-T	HET
SBS	Chr2	28145108	T-A	Homo
SBS	Chr2	34686306	G-A	HET
SBS	Chr3	11982782	A-G	HET
SBS	Chr3	1508600	G-A	Homo
SBS	Chr3	19696004	C-T	Homo
SBS	Chr3	7326501	T-A	Homo	STOP_GAINED	LOC_Os03g13550
SBS	Chr4	10313619	G-A	HET
SBS	Chr4	15414853	T-C	HET
SBS	Chr4	17413893	C-T	HET
SBS	Chr4	17456279	T-A	HET
SBS	Chr4	29336760	T-G	HET
SBS	Chr5	5769934	C-T	Homo
SBS	Chr6	15020809	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g25720
SBS	Chr6	2281446	T-G	HET
SBS	Chr7	27358506	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g45840
SBS	Chr8	11002447	A-T	HET
SBS	Chr8	11131788	G-A	HET
SBS	Chr8	4923838	C-T	HET
SBS	Chr9	5627103	T-A	HET

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	859946	859947	1
Deletion	Chr2	957683	957686	3
Deletion	Chr2	2059555	2059557	2
Deletion	Chr10	5832710	5832711	1
Deletion	Chr10	6615820	6615823	3	LOC_Os10g11920
Deletion	Chr6	7810371	7810379	8
Deletion	Chr12	8022335	8022350	15
Deletion	Chr12	8699756	8699761	5
Deletion	Chr10	8962001	8995000	32999	4
Deletion	Chr10	9071001	9172000	100999	14
Deletion	Chr4	12023001	12104000	80999	10
Deletion	Chr8	12655551	12655554	3
Deletion	Chr9	13068656	13068665	9
Deletion	Chr2	13374001	13398000	23999	5
Deletion	Chr2	13404001	13461000	56999	13
Deletion	Chr7	14568224	14568229	5
Deletion	Chr11	15784490	15784491	1
Deletion	Chr10	17747083	17747089	6
Deletion	Chr4	17819989	17819990	1
Deletion	Chr4	18442001	18450000	7999	2
Deletion	Chr9	18903572	18903576	4
Deletion	Chr11	21915001	21993000	77999	10
Deletion	Chr8	21973001	21991000	17999	4
Deletion	Chr8	22054558	22054563	5	LOC_Os08g35010
Deletion	Chr8	23802263	23802264	1
Deletion	Chr11	24292964	24292966	2
Deletion	Chr11	25183222	25183224	2
Deletion	Chr8	26226637	26226639	2
Deletion	Chr12	26812100	26812131	31
Deletion	Chr1	30298001	30330000	31999	4
Deletion	Chr2	32293947	32293955	8
Deletion	Chr3	33695951	33695954	3
Deletion	Chr2	33866118	33866120	2
Deletion	Chr1	38331001	38367000	35999	5
Deletion	Chr1	39023200	39023206	6
Deletion	Chr1	41689716	41689719	3

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10418465	10418465	1	LOC_Os01g18520
Insertion	Chr1	10882620	10882622	3
Insertion	Chr10	20202591	20202592	2
Insertion	Chr11	9368836	9368838	3
Insertion	Chr2	20960937	20960938	2
Insertion	Chr2	33270300	33270302	3
Insertion	Chr7	6252890	6252891	2
Insertion	Chr8	18175699	18175702	4

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	46338	255774	2
Inversion	Chr10	8992716	9169360	LOC_Os10g17770
Inversion	Chr4	12520367	12576935	2
Inversion	Chr6	17296350	17296648
Inversion	Chr8	17574107	17883151	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	14462355	Chr4	12223961	2
Translocation	Chr12	14462356	Chr4	12222064	2

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