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Mutant Information |
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Mutant Name | FN2478 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2478 Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21365218 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g38140 |
SBS | Chr1 | 22489257 | T-C | HET | ||
SBS | Chr1 | 28087828 | A-T | HET | ||
SBS | Chr1 | 28436562 | C-G | HET | ||
SBS | Chr11 | 19296640 | G-T | HET | ||
SBS | Chr12 | 14101034 | G-A | HET | ||
SBS | Chr12 | 15281474 | A-G | Homo | ||
SBS | Chr2 | 21595143 | A-C | Homo | ||
SBS | Chr2 | 29851020 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g48770 |
SBS | Chr3 | 18253975 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g31910 |
SBS | Chr3 | 31831317 | A-C | HET | ||
SBS | Chr3 | 33070629 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g58080 |
SBS | Chr3 | 5872414 | A-T | HET | ||
SBS | Chr3 | 8720012 | A-C | HET | ||
SBS | Chr4 | 15449110 | G-T | Homo | ||
SBS | Chr4 | 7202386 | A-T | HET | ||
SBS | Chr4 | 7958466 | A-T | Homo | ||
SBS | Chr5 | 19983339 | T-C | HET | ||
SBS | Chr5 | 20710182 | A-G | HET | ||
SBS | Chr6 | 11873137 | C-T | HET | ||
SBS | Chr6 | 12226975 | G-C | HET | ||
SBS | Chr6 | 23364101 | G-A | HET | ||
SBS | Chr6 | 30444801 | C-T | HET | ||
SBS | Chr7 | 14313151 | C-T | HET | ||
SBS | Chr7 | 20239542 | T-A | HET | ||
SBS | Chr8 | 11186460 | A-G | HET | ||
SBS | Chr8 | 18391676 | T-C | Homo | ||
SBS | Chr9 | 11480415 | G-A | Homo | ||
SBS | Chr9 | 20963152 | T-C | HET | ||
SBS | Chr9 | 21674082 | G-C | HET | ||
SBS | Chr9 | 22377116 | C-T | HET |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 5535001 | 5575000 | 39999 | 9 |
Deletion | Chr6 | 6519412 | 6519413 | 1 | |
Deletion | Chr6 | 6671542 | 6671543 | 1 | |
Deletion | Chr12 | 7627036 | 7627045 | 9 | |
Deletion | Chr8 | 11665026 | 11665027 | 1 | |
Deletion | Chr8 | 11740862 | 11740863 | 1 | |
Deletion | Chr1 | 12181103 | 12181111 | 8 | |
Deletion | Chr12 | 13820962 | 13820973 | 11 | LOC_Os12g24250 |
Deletion | Chr12 | 15874444 | 15874476 | 32 | |
Deletion | Chr12 | 16544982 | 16544993 | 11 | |
Deletion | Chr10 | 20519953 | 20519962 | 9 | LOC_Os10g38402 |
Deletion | Chr8 | 22029739 | 22029744 | 5 | |
Deletion | Chr11 | 23897473 | 23897495 | 22 | |
Deletion | Chr11 | 23984170 | 23984171 | 1 | |
Deletion | Chr6 | 25747083 | 25747084 | 1 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 11483185 | 11483188 | 4 | |
Insertion | Chr7 | 12486198 | 12486199 | 2 |
Inversions: 5
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 4332524 | Chr1 | 25576624 | |
Translocation | Chr4 | 4808982 | Chr1 | 24525238 | |
Translocation | Chr10 | 5484403 | Chr2 | 14658145 |