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Mutant Information

Mutant NameFN2478 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2478 Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 31
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121365218C-THETNON_SYNONYMOUS_CODINGLOC_Os01g38140
SBSChr122489257T-CHET
SBSChr128087828A-THET
SBSChr128436562C-GHET
SBSChr1119296640G-THET
SBSChr1214101034G-AHET
SBSChr1215281474A-GHomo
SBSChr221595143A-CHomo
SBSChr229851020G-CHomoNON_SYNONYMOUS_CODINGLOC_Os02g48770
SBSChr318253975G-AHETNON_SYNONYMOUS_CODINGLOC_Os03g31910
SBSChr331831317A-CHET
SBSChr333070629A-GHETNON_SYNONYMOUS_CODINGLOC_Os03g58080
SBSChr35872414A-THET
SBSChr38720012A-CHET
SBSChr415449110G-THomo
SBSChr47202386A-THET
SBSChr47958466A-THomo
SBSChr519983339T-CHET
SBSChr520710182A-GHET
SBSChr611873137C-THET
SBSChr612226975G-CHET
SBSChr623364101G-AHET
SBSChr630444801C-THET
SBSChr714313151C-THET
SBSChr720239542T-AHET
SBSChr811186460A-GHET
SBSChr818391676T-CHomo
SBSChr911480415G-AHomo
SBSChr920963152T-CHET
SBSChr921674082G-CHET
SBSChr922377116C-THET

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1255350015575000399999
DeletionChr6651941265194131
DeletionChr6667154266715431
DeletionChr12762703676270459
DeletionChr811665026116650271
DeletionChr811740862117408631
DeletionChr112181103121811118
DeletionChr12138209621382097311LOC_Os12g24250
DeletionChr12158744441587447632
DeletionChr12165449821654499311
DeletionChr1020519953205199629LOC_Os10g38402
DeletionChr822029739220297445
DeletionChr11238974732389749522
DeletionChr1123984170239841711
DeletionChr625747083257470841

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr411483185114831884
InsertionChr712486198124861992

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr1255777645596628
InversionChr3585273158782002
InversionChr3585395358782042
InversionChr920685566209213582
InversionChr920685592209213742

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr124332524Chr125576624
TranslocationChr44808982Chr124525238
TranslocationChr105484403Chr214658145