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Mutant Information

Mutant Name	FN2480 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2480 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18080373	C-T	Homo
SBS	Chr1	26692532	C-T	Homo
SBS	Chr1	26692533	C-T	Homo
SBS	Chr1	36752482	T-C	Homo
SBS	Chr1	38988359	G-T	HET
SBS	Chr2	183791	T-G	HET
SBS	Chr2	3166275	C-T	HET
SBS	Chr2	9267320	G-A	HET
SBS	Chr2	10948184	G-A	HET
SBS	Chr2	22566977	C-T	HET
SBS	Chr2	28871502	T-A	HET
SBS	Chr3	1707620	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03790
SBS	Chr3	7344873	A-T	HET
SBS	Chr3	28043010	G-A	Homo
SBS	Chr4	15822371	G-A	HET
SBS	Chr4	16807881	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28410
SBS	Chr4	18474996	C-T	HET
SBS	Chr4	25391469	G-T	HET
SBS	Chr4	30847118	T-A	Homo
SBS	Chr4	30847119	C-A	Homo
SBS	Chr5	14513163	A-G	HET
SBS	Chr5	17295486	A-G	HET
SBS	Chr5	23573871	A-G	HET
SBS	Chr5	29036928	C-T	HET
SBS	Chr6	8865776	G-A	HET
SBS	Chr6	9119692	A-G	HET
SBS	Chr7	159078	A-G	HET
SBS	Chr7	3439611	G-A	Homo
SBS	Chr7	18028459	C-T	HET
SBS	Chr7	22553091	C-T	Homo
SBS	Chr8	10708962	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17480
SBS	Chr9	6070674	C-G	HET
SBS	Chr9	14988639	G-A	Homo
SBS	Chr9	22325175	C-A	HET
SBS	Chr10	12429396	C-T	HET
SBS	Chr10	23181305	T-A	HET
SBS	Chr11	8469325	G-T	Homo
SBS	Chr12	3255893	G-A	HET
SBS	Chr12	9471557	A-G	HET
SBS	Chr12	11342989	G-A	HET
SBS	Chr12	14771961	A-G	HET
SBS	Chr12	22041964	T-C	Homo
SBS	Chr12	24422317	T-C	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1828265	1828269	4	LOC_Os01g04150
Deletion	Chr4	6209721	6209727	6
Deletion	Chr7	6728845	6728855	10
Deletion	Chr1	7736439	7736441	2
Deletion	Chr10	9769091	9769098	7
Deletion	Chr11	10994564	10994583	19	LOC_Os11g19230
Deletion	Chr1	14813532	14813541	9
Deletion	Chr4	17329863	17329864	1	LOC_Os04g29224
Deletion	Chr1	19383001	19450000	66999	11
Deletion	Chr3	20793700	20793712	12
Deletion	Chr1	23123055	23123063	8
Deletion	Chr1	24052608	24052618	10	LOC_Os01g42350
Deletion	Chr7	28527440	28527458	18
Deletion	Chr4	32228010	32228011	1
Deletion	Chr4	34211063	34211064	1
Deletion	Chr3	35614776	35614796	20

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	28784630	28784631	2
Insertion	Chr7	2829507	2829508	2
Insertion	Chr5	21816867	21816867	1
Insertion	Chr6	28763937	28763939	3	LOC_Os06g47510
Insertion	Chr10	4388176	4388179	4
Insertion	Chr12	12301752	12301752	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	582951	Chr1	26783411	2
Translocation	Chr10	590969	Chr4	7918998
Translocation	Chr10	9157437	Chr1	19386378	2
Translocation	Chr10	9157779	Chr1	19447943
Translocation	Chr8	13069232	Chr4	16892790
Translocation	Chr12	19425954	Chr10	9156894	2
Translocation	Chr11	22529369	Chr8	10765827	LOC_Os11g37990
Translocation	Chr10	22790924	Chr4	7919546	LOC_Os10g42340
Translocation	Chr10	22791309	Chr1	26784226	2

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