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Mutant Information

Mutant Name	FN2485 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2485 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21088552	C-A	HET
SBS	Chr1	27704866	G-C	HET
SBS	Chr1	30010551	G-A	HET
SBS	Chr1	30010552	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52170
SBS	Chr1	36211166	A-G	HET
SBS	Chr1	3719129	A-G	HET
SBS	Chr1	38274510	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g65904
SBS	Chr10	3383180	T-A	Homo
SBS	Chr10	5324440	G-A	Homo
SBS	Chr11	16749525	G-A	Homo
SBS	Chr11	3819558	T-A	Homo
SBS	Chr12	17405505	T-C	Homo
SBS	Chr12	8122896	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14270
SBS	Chr2	11557591	C-A	HET
SBS	Chr2	27205565	T-A	Homo
SBS	Chr2	28727578	G-T	Homo
SBS	Chr2	30588927	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g50090
SBS	Chr2	5617126	G-A	Homo
SBS	Chr3	11988939	G-A	Homo
SBS	Chr3	19644427	T-A	Homo	STOP_GAINED	LOC_Os03g35430
SBS	Chr3	30371667	C-G	HET
SBS	Chr3	3485630	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g06890
SBS	Chr3	3485632	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g06890
SBS	Chr4	13059975	T-G	HET
SBS	Chr4	24179144	A-T	HET
SBS	Chr4	2543333	A-G	HET
SBS	Chr4	26538894	C-T	HET
SBS	Chr4	31585635	T-A	HET
SBS	Chr4	6208089	G-T	HET
SBS	Chr5	10130084	C-T	Homo
SBS	Chr5	12232953	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20830
SBS	Chr5	19793092	T-C	Homo
SBS	Chr5	21268343	C-A	HET
SBS	Chr6	12961714	C-T	HET
SBS	Chr6	17263294	T-A	HET
SBS	Chr6	30350473	G-A	HET
SBS	Chr6	4804024	G-T	HET
SBS	Chr6	9221431	A-G	HET
SBS	Chr7	12747002	T-C	HET
SBS	Chr7	13180431	T-C	HET
SBS	Chr7	23855936	G-A	Homo
SBS	Chr7	3287861	G-A	HET
SBS	Chr8	17948674	A-T	HET
SBS	Chr8	18565123	C-A	Homo
SBS	Chr8	27341583	A-T	HET
SBS	Chr9	11247129	C-T	HET
SBS	Chr9	12264738	T-C	HET
SBS	Chr9	17664849	G-A	HET
SBS	Chr9	20671038	T-A	HET
SBS	Chr9	2286908	C-T	HET
SBS	Chr9	6312484	C-T	Homo
SBS	Chr9	9070708	G-T	HET
SBS	Chr9	9677571	T-C	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2719001	2917000	197999	31
Deletion	Chr10	2732001	2755000	22999	4
Deletion	Chr6	4641327	4641331	4
Deletion	Chr5	8713845	8713849	4
Deletion	Chr5	10916162	10916163	1
Deletion	Chr11	11165665	11165671	6	LOC_Os11g19420
Deletion	Chr9	13155528	13155529	1	LOC_Os09g21710
Deletion	Chr7	13875001	13907000	31999	5
Deletion	Chr7	14767001	14777000	9999	2
Deletion	Chr12	16714001	16781000	66999	9
Deletion	Chr8	17948281	17948282	1
Deletion	Chr5	19326027	19326028	1
Deletion	Chr5	21772839	21772840	1
Deletion	Chr9	22856146	22856164	18	LOC_Os09g39870
Deletion	Chr12	23455244	23455246	2
Deletion	Chr2	27204171	27204179	8
Deletion	Chr2	27398871	27398883	12
Deletion	Chr2	27591557	27591560	3	LOC_Os02g45380
Deletion	Chr3	28252397	28252398	1	LOC_Os03g49610
Deletion	Chr3	36141704	36141706	2
Deletion	Chr1	37861161	37861162	1	LOC_Os01g65240

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10054784	10054784	1
Insertion	Chr10	5985524	5985524	1
Insertion	Chr2	4396816	4396817	2
Insertion	Chr5	29536988	29536990	3
Insertion	Chr8	8732669	8732669	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2761381	2762165	LOC_Os10g05560
Inversion	Chr7	19100873	20069195	LOC_Os07g32170
Inversion	Chr7	19100898	20069198	LOC_Os07g32170

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2239005	Chr1	2819544
Translocation	Chr11	3630102	Chr2	24318498	2
Translocation	Chr9	8406220	Chr6	11805215
Translocation	Chr9	21552287	Chr2	34253056	LOC_Os09g37310
Translocation	Chr11	22131471	Chr7	11905179
Translocation	Chr12	23684507	Chr1	14833841

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