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Mutant Information

Mutant Name	FN2533-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2533-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10901815	T-C	HET
SBS	Chr1	12152801	C-A	HET
SBS	Chr1	19537433	G-T	HET
SBS	Chr1	22415709	C-T	HET
SBS	Chr1	41310523	G-C	HET
SBS	Chr1	8039391	T-C	HET
SBS	Chr10	13673727	T-G	HET
SBS	Chr10	18131442	C-T	HET
SBS	Chr10	19420732	A-G	Homo
SBS	Chr10	19420734	A-T	Homo
SBS	Chr10	240383	A-G	HET
SBS	Chr10	4980890	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09220
SBS	Chr10	928181	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02500
SBS	Chr11	11157804	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19400
SBS	Chr11	16096940	C-T	Homo
SBS	Chr11	17205727	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29680
SBS	Chr11	28241693	C-A	HET
SBS	Chr11	5539483	A-T	HET
SBS	Chr12	13894541	T-C	Homo
SBS	Chr2	23034896	C-T	HET
SBS	Chr2	3610807	G-A	HET
SBS	Chr2	3905820	C-A	HET
SBS	Chr2	5765606	C-T	HET
SBS	Chr2	8482121	C-T	HET
SBS	Chr3	14027186	C-A	Homo
SBS	Chr3	14027188	T-C	Homo
SBS	Chr3	18157017	T-C	Homo
SBS	Chr3	31724089	T-C	HET
SBS	Chr3	32296529	C-A	HET
SBS	Chr3	34405202	C-T	HET
SBS	Chr3	4138620	A-T	HET
SBS	Chr3	4973249	C-T	HET
SBS	Chr3	8074730	T-C	Homo
SBS	Chr4	3528276	T-C	HET
SBS	Chr6	15027769	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25730
SBS	Chr6	28099048	T-A	HET
SBS	Chr7	13653932	T-C	HET
SBS	Chr7	16686661	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28510
SBS	Chr7	17845212	T-C	HET
SBS	Chr7	27704451	A-G	Homo
SBS	Chr8	12047315	T-A	HET
SBS	Chr8	12065273	G-A	HET
SBS	Chr8	25845642	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40840
SBS	Chr8	7295329	T-A	HET	STOP_GAINED	LOC_Os08g12380
SBS	Chr9	17997457	G-A	HET
SBS	Chr9	20533222	C-T	Homo
SBS	Chr9	594806	G-A	Homo
SBS	Chr9	595997	C-A	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	363924	363931	7
Deletion	Chr1	488959	488980	21	LOC_Os01g01900
Deletion	Chr4	7776750	7776752	2
Deletion	Chr7	10433963	10433965	2
Deletion	Chr1	11667817	11667910	93
Deletion	Chr3	14114765	14114774	9
Deletion	Chr3	19648163	19648164	1	LOC_Os03g35440
Deletion	Chr12	23436789	23436809	20
Deletion	Chr3	24370001	24447000	76999	8
Deletion	Chr12	25179177	25179178	1	LOC_Os12g40670
Deletion	Chr4	27594280	27594281	1
Deletion	Chr4	27729001	27791000	61999	12
Deletion	Chr4	28144001	28242000	97999	17
Deletion	Chr4	28249001	28297000	47999	11
Deletion	Chr4	30554765	30554766	1
Deletion	Chr1	37224333	37224334	1	LOC_Os01g64080

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	9229235	9229235	1
Insertion	Chr2	23150804	23150806	3
Insertion	Chr9	3141605	3141605	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr1	6954645	7839095
Inversion	Chr1	7310033	7839087
Inversion	Chr8	20445577	20844954
Inversion	Chr8	20445582	20844957
Inversion	Chr4	27729269	28147531
Inversion	Chr4	27790579	28296224

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3249472	Chr1	2526286	LOC_Os11g06670
Translocation	Chr8	8339347	Chr7	3172532
Translocation	Chr2	16887664	Chr1	16560201	2
Translocation	Chr11	17928556	Chr9	5981935
Translocation	Chr7	18351899	Chr3	3505771	2
Translocation	Chr5	18985805	Chr2	3226637
Translocation	Chr4	19146632	Chr3	17621955	2
Translocation	Chr7	27214486	Chr4	2638843	2

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