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Mutant Information

Mutant Name	FN2535-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2535-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13730501	T-C	HET
SBS	Chr1	20249950	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36480
SBS	Chr1	23538371	C-G	HET
SBS	Chr1	34268896	C-T	HET
SBS	Chr1	37112877	A-G	Homo
SBS	Chr1	43063476	A-C	Homo
SBS	Chr1	43063477	C-A	Homo
SBS	Chr2	2182351	A-G	HET
SBS	Chr2	3239853	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06500
SBS	Chr2	11099418	G-A	HET
SBS	Chr2	11099881	A-T	HET
SBS	Chr2	28611472	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g46900
SBS	Chr2	30660980	C-A	HET
SBS	Chr3	8979471	G-A	HET
SBS	Chr3	27981856	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g49120
SBS	Chr3	35329786	G-A	HET
SBS	Chr4	1445771	G-C	HET
SBS	Chr4	6269660	T-C	HET
SBS	Chr4	7780983	A-G	HET
SBS	Chr4	9660456	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17640
SBS	Chr4	14533348	T-C	HET
SBS	Chr4	25814028	A-G	HET
SBS	Chr5	462628	A-G	HET
SBS	Chr7	8404042	C-T	HET
SBS	Chr7	9195249	C-A	HET
SBS	Chr7	9645562	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16460
SBS	Chr7	9645563	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16460
SBS	Chr7	15068589	C-T	HET
SBS	Chr7	23056696	A-G	HET
SBS	Chr8	18116882	G-C	Homo
SBS	Chr9	6719864	T-C	HET
SBS	Chr9	6859100	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g12130
SBS	Chr9	7299822	T-C	HET
SBS	Chr9	15124765	C-T	HET
SBS	Chr9	21196033	A-G	HET
SBS	Chr9	21904232	C-T	HET
SBS	Chr9	22552301	G-T	HET
SBS	Chr10	6762971	C-G	HET
SBS	Chr10	8000369	T-C	HET
SBS	Chr10	13495400	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26050
SBS	Chr10	19209662	A-T	HET
SBS	Chr10	21529600	T-C	HET
SBS	Chr11	17732187	C-T	HET
SBS	Chr12	3411286	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06980
SBS	Chr12	9424739	C-T	Homo
SBS	Chr12	20437607	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33910
SBS	Chr12	20596145	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g34090
SBS	Chr12	20596146	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g34090
SBS	Chr12	20596147	C-T	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	64116	64470	354
Deletion	Chr9	120424	120425	1
Deletion	Chr4	7071480	7071481	1
Deletion	Chr4	7219471	7219478	7
Deletion	Chr7	7439001	7491000	51999	9
Deletion	Chr4	9382001	9436000	53999	9
Deletion	Chr12	10641914	10641922	8
Deletion	Chr11	11380109	11380110	1
Deletion	Chr6	15060394	15060402	8	LOC_Os06g25780
Deletion	Chr8	17497001	17739000	241999	36
Deletion	Chr8	17745001	17873000	127999	17
Deletion	Chr8	18563001	18825000	261999	34
Deletion	Chr5	20834674	20834677	3
Deletion	Chr11	28824196	28824210	14
Deletion	Chr3	34276544	34276551	7
Deletion	Chr2	34523282	34523314	32	LOC_Os02g56390
Deletion	Chr3	36030001	36043000	12999	LOC_Os03g63810

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	3391997	3392003	7

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	959685	1024631	2
Inversion	Chr7	14901792	15032204
Inversion	Chr7	14901802	15032214
Inversion	Chr1	19540600	20453969
Inversion	Chr1	19540605	20453983

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3595670	Chr1	12316488	LOC_Os06g07474
Translocation	Chr6	3700326	Chr1	12316543
Translocation	Chr6	7292234	Chr2	18076972	2
Translocation	Chr7	7439158	Chr3	30809728	2
Translocation	Chr7	7441341	Chr3	30809733	2
Translocation	Chr7	7689117	Chr1	12316565	LOC_Os07g13400
Translocation	Chr9	8475172	Chr5	8030676	LOC_Os09g14340
Translocation	Chr4	9382368	Chr2	28251277	LOC_Os04g17130

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