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Mutant Information

Mutant Name	FN317-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN317-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	14813865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28470
SBS	Chr12	1720970	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	27221257	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g43850
SBS	Chr2	20932419	C-A	HOMO	INTRON
SBS	Chr2	20936385	C-G	HET	INTERGENIC
SBS	Chr3	2505446	T-C	HET	INTERGENIC
SBS	Chr4	10394394	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18730
SBS	Chr4	20660800	A-G	HET	INTERGENIC
SBS	Chr4	20660802	A-T	HET	INTERGENIC
SBS	Chr4	21580004	C-T	HET	INTRON
SBS	Chr4	21580009	C-A	HET	INTRON
SBS	Chr4	6945052	G-T	HET	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27200736	T-C	HOMO	INTERGENIC
SBS	Chr6	28032019	T-C	HET	INTERGENIC
SBS	Chr7	25374726	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g42400
SBS	Chr7	7686451	T-G	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	357774	994134	636360	98
Deletion	Chr12	766367	766376	9
Deletion	Chr8	2095810	2095827	17
Deletion	Chr2	4764911	4764917	6
Deletion	Chr9	6488001	6503000	15000	4
Deletion	Chr4	6945153	6945158	5
Deletion	Chr4	7757663	7757688	25
Deletion	Chr6	8755176	8755195	19
Deletion	Chr1	10651000	10651003	3
Deletion	Chr11	11053143	11053144	1
Deletion	Chr4	13787173	13787175	2
Deletion	Chr9	15154269	15154273	4
Deletion	Chr1	17033151	17033162	11
Deletion	Chr8	19345604	19345605	1
Deletion	Chr2	20436001	20447000	11000	2
Deletion	Chr8	20764814	20764816	2
Deletion	Chr6	20932545	20932560	15
Deletion	Chr12	21891419	21891427	8
Deletion	Chr3	22127001	22140000	13000	2
Deletion	Chr12	24751245	24751247	2
Deletion	Chr6	26432738	26432747	9
Deletion	Chr4	26469118	26469120	2
Deletion	Chr1	26632287	26632288	1	LOC_Os01g46750
Deletion	Chr2	27075191	27075192	1
Deletion	Chr8	28391251	28391263	12
Deletion	Chr3	28444713	28444721	8
Deletion	Chr3	35032123	35032125	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	23461991	23461992	2
Insertion	Chr3	36001143	36001144	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	27347158	29208238
Inversion	Chr5	27353896	29208190	LOC_Os05g47750

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	34006564	Chr3	18216865	LOC_Os03g31839

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