Search Nipponbare

Mutant Information

Mutant Name	FN448-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN448-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18080199	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	41818266	A-G	HOMO	INTERGENIC
SBS	Chr1	41818270	G-A	HOMO	INTERGENIC
SBS	Chr1	9587034	C-T	HOMO	INTERGENIC
SBS	Chr11	1096912	C-T	HET	INTERGENIC
SBS	Chr11	11933705	C-A	HET	INTERGENIC
SBS	Chr11	11970684	A-T	HET	INTERGENIC
SBS	Chr11	20699516	A-T	HOMO	INTRON
SBS	Chr11	21712681	T-C	HET	INTERGENIC
SBS	Chr11	23805056	C-T	HET	INTERGENIC
SBS	Chr12	26102732	A-C	HET	INTRON
SBS	Chr2	18031443	C-T	HET	INTERGENIC
SBS	Chr2	25648686	G-A	HET	INTERGENIC
SBS	Chr3	22934264	G-A	HOMO	INTRON
SBS	Chr3	2599867	T-C	HET	INTRON
SBS	Chr3	28661597	A-G	HET	INTERGENIC
SBS	Chr4	15080017	T-A	HET	INTERGENIC
SBS	Chr4	19376735	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32320
SBS	Chr4	20154698	C-A	HET	INTERGENIC
SBS	Chr4	23439474	T-A	HET	INTERGENIC
SBS	Chr4	28330131	G-T	HOMO	INTERGENIC
SBS	Chr5	19468513	A-G	HET	INTERGENIC
SBS	Chr6	11497493	T-A	HET	INTERGENIC
SBS	Chr6	13187539	A-G	HET	INTRON
SBS	Chr6	13856540	T-G	HOMO	INTRON
SBS	Chr6	29088630	T-A	HET	INTRON
SBS	Chr6	9363287	A-G	HET	INTERGENIC
SBS	Chr7	13034255	C-T	HOMO	INTRON
SBS	Chr7	15144770	G-A	HET	STOP_GAINED	LOC_Os07g26350
SBS	Chr7	19390031	T-A	HOMO	INTERGENIC
SBS	Chr7	26203582	G-A	HOMO	INTRON
SBS	Chr8	13757954	G-T	HET	INTRON
SBS	Chr8	24052159	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g37970
SBS	Chr9	14561129	C-T	HET	INTERGENIC
SBS	Chr9	4856668	A-G	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	435858	435859	1
Deletion	Chr12	1519697	1519698	1
Deletion	Chr4	1567057	1567062	5
Deletion	Chr6	1657679	1657687	8
Deletion	Chr11	4097385	4097386	1
Deletion	Chr7	8073404	8076332	2928	LOC_Os07g14150
Deletion	Chr9	11300763	11300775	12
Deletion	Chr2	15412838	15412839	1
Deletion	Chr4	16774309	16774329	20
Deletion	Chr2	18039674	18039675	1	LOC_Os02g30310
Deletion	Chr9	18221515	18221516	1
Deletion	Chr5	19655267	19655268	1
Deletion	Chr4	20053402	20053418	16	LOC_Os04g33120
Deletion	Chr5	20378428	20378432	4
Deletion	Chr11	20987461	20987462	1
Deletion	Chr8	22933499	22933523	24
Deletion	Chr3	30873413	30873416	3
Deletion	Chr1	33427139	33427140	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11768578	11768579	2
Insertion	Chr1	2961170	2961175	6
Insertion	Chr1	30600695	30600695	1
Insertion	Chr5	27051169	27051169	1
Insertion	Chr6	6325966	6325971	6
Insertion	Chr7	22054665	22054666	2
Insertion	Chr8	20315618	20315627	10

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9923879	11885986	LOC_Os11g20510
Inversion	Chr1	10096090	12751944	2
Inversion	Chr11	22418926	22432951	LOC_Os11g37860
Inversion	Chr11	22418941	22433094	LOC_Os11g37860
Inversion	Chr2	34931316	35216202	LOC_Os02g57040

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	4820787	Chr9	18095067
Translocation	Chr7	5048173	Chr3	19437692
Translocation	Chr3	10902804	Chr1	34373526
Translocation	Chr7	21189219	Chr4	13727661
Translocation	Chr12	27049993	Chr6	6604775

Main menu