Search Nipponbare

Mutant Information

Mutant Name	FN601-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN601-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Very Low (Below 24%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	11921231	C-T	HET	INTERGENIC
SBS	Chr12	12777268	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr2	24912223	G-A	HOMO	INTERGENIC
SBS	Chr2	33668084	G-T	HOMO	INTERGENIC
SBS	Chr3	10677023	T-C	HET	INTERGENIC
SBS	Chr3	19585872	A-G	HET	INTRON
SBS	Chr3	26963759	G-C	HET	INTRON
SBS	Chr3	33778499	A-G	HET	INTRON
SBS	Chr3	487107	C-T	HOMO	INTERGENIC
SBS	Chr3	9607356	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17240
SBS	Chr4	1908905	C-T	HET	INTERGENIC
SBS	Chr4	24319257	T-A	HET	INTRON
SBS	Chr4	25102166	A-G	HET	UTR_5_PRIME
SBS	Chr5	19510026	T-C	HET	UTR_3_PRIME
SBS	Chr5	5596276	G-A	HOMO	INTERGENIC
SBS	Chr5	7035034	A-T	HOMO	INTRON
SBS	Chr6	14838387	G-A	HET	INTERGENIC
SBS	Chr6	20406028	T-A	HET	INTERGENIC
SBS	Chr6	2721781	T-A	HET	INTERGENIC
SBS	Chr6	7522093	C-A	HET	INTERGENIC
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr7	28848212	A-T	HET	INTERGENIC
SBS	Chr7	8495693	T-C	HOMO	INTERGENIC
SBS	Chr8	11108762	G-C	HOMO	INTERGENIC
SBS	Chr8	12389009	C-A	HOMO	INTERGENIC
SBS	Chr8	18376393	C-A	HOMO	INTERGENIC
SBS	Chr9	17325433	T-G	HET	UTR_3_PRIME
SBS	Chr9	19002150	G-A	HET	INTERGENIC
SBS	Chr9	20847694	A-G	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1660152	1660156	4
Deletion	Chr11	2483444	2483454	10
Deletion	Chr12	2935132	2935146	14	LOC_Os12g06190
Deletion	Chr1	5304298	5304370	72
Deletion	Chr6	5803341	5803344	3
Deletion	Chr11	8521001	8592000	71000	9
Deletion	Chr6	12562345	12562355	10
Deletion	Chr10	13734465	13734467	2
Deletion	Chr12	14056948	14056949	1
Deletion	Chr7	15243441	15243450	9
Deletion	Chr9	15275024	15275027	3
Deletion	Chr3	15505659	15505660	1	LOC_Os03g27080
Deletion	Chr4	16233734	16233735	1	LOC_Os04g27450
Deletion	Chr2	18693542	18693543	1
Deletion	Chr9	20751997	20752145	148	LOC_Os09g36040
Deletion	Chr8	20974307	20974318	11	LOC_Os08g33590
Deletion	Chr5	22337920	22337928	8
Deletion	Chr7	22852358	22852368	10
Deletion	Chr1	23678682	23678979	297
Deletion	Chr7	25496048	25496049	1
Deletion	Chr7	26453306	26453315	9
Deletion	Chr4	28378448	28378451	3
Deletion	Chr2	32476293	32476294	1
Deletion	Chr1	40696310	40696314	4	LOC_Os01g70270

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	17326875	17326876	2
Insertion	Chr3	905502	905502	1
Insertion	Chr5	2338785	2338785	1	LOC_Os05g04860
Insertion	Chr6	30067792	30067792	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2725618	8617346

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8941254	Chr1	30237199

Main menu