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Mutant Information

Mutant Name	FN689-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN689-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6375782	A-G	HOMO	INTERGENIC
SBS	Chr1	20069633	C-T	HOMO	INTERGENIC
SBS	Chr1	35271268	G-C	HET	INTERGENIC
SBS	Chr2	10697770	G-A	HOMO	INTERGENIC
SBS	Chr2	10697772	C-A	HOMO	INTERGENIC
SBS	Chr2	13150437	G-A	HOMO	INTERGENIC
SBS	Chr4	3053521	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05900
SBS	Chr4	4177960	G-A	HET	INTERGENIC
SBS	Chr4	19258207	A-C	HOMO	INTERGENIC
SBS	Chr4	26196729	A-T	HET	INTERGENIC
SBS	Chr4	27524873	T-A	HET	INTERGENIC
SBS	Chr5	7510813	G-A	HET	INTERGENIC
SBS	Chr6	4985635	G-A	HOMO	INTERGENIC
SBS	Chr6	11607181	C-T	HET	INTERGENIC
SBS	Chr6	29516187	T-C	HET	INTERGENIC
SBS	Chr8	14247548	C-T	HOMO	INTERGENIC
SBS	Chr8	18419223	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	11341555	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18500
SBS	Chr9	11341557	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18500
SBS	Chr9	11341559	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18500
SBS	Chr9	13571830	A-T	HOMO	INTRON
SBS	Chr9	17972799	A-T	HOMO	INTERGENIC
SBS	Chr10	1629306	G-A	HOMO	INTRON
SBS	Chr10	2938924	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05810
SBS	Chr10	3023243	C-A	HET	INTERGENIC
SBS	Chr10	21815530	A-C	HOMO	INTERGENIC
SBS	Chr11	2959153	G-A	HET	INTERGENIC
SBS	Chr11	2959154	G-A	HET	INTERGENIC
SBS	Chr11	20814605	A-C	HOMO	INTERGENIC
SBS	Chr11	21018611	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	21018612	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g35810
SBS	Chr11	23819319	G-A	HET	INTERGENIC
SBS	Chr12	13556360	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g23840

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1774804	1774805	1
Deletion	Chr11	2067619	2067627	8
Deletion	Chr11	3245359	3245363	4
Deletion	Chr4	3555832	3555833	1	LOC_Os04g06770
Deletion	Chr7	3566169	3566237	68	LOC_Os07g07194
Deletion	Chr8	3727296	3727304	8
Deletion	Chr6	9748522	9748531	9
Deletion	Chr11	10011566	10011573	7
Deletion	Chr9	10288001	10288029	28	LOC_Os09g16850
Deletion	Chr3	10655855	10655866	11
Deletion	Chr9	10912134	11184766	272632	35
Deletion	Chr9	11184758	11387093	202335	32
Deletion	Chr6	13357702	13357710	8
Deletion	Chr9	14441917	14441918	1
Deletion	Chr10	15648001	15717000	69000	15
Deletion	Chr9	15862793	15862797	4	LOC_Os09g26250
Deletion	Chr6	17105895	17105937	42	LOC_Os06g29770
Deletion	Chr8	17687571	17687583	12
Deletion	Chr1	20067937	20067938	1
Deletion	Chr1	21278608	21278611	3	LOC_Os01g37980
Deletion	Chr10	21909489	21909507	18
Deletion	Chr11	22162746	22162752	6
Deletion	Chr7	23664273	23664274	1
Deletion	Chr1	24053292	24053300	8	LOC_Os01g42350
Deletion	Chr2	25470146	25470148	2
Deletion	Chr1	28833828	28833829	1
Deletion	Chr6	29485257	29485258	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	12550646	12550646	1
Insertion	Chr11	24574518	24574519	2
Insertion	Chr4	11939803	11939803	1
Insertion	Chr6	30941245	30941245	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9374766	10912180
Inversion	Chr9	10267558	11387095

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	822541	Chr4	16367930	LOC_Os11g02600

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