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Mutant Information

Mutant Name	FN722-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN722-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13552365	C-T	HOMO	INTRON
SBS	Chr1	28152347	G-A	HET	INTERGENIC
SBS	Chr1	35121130	G-A	HOMO	INTERGENIC
SBS	Chr10	15348640	T-A	HET	INTRON
SBS	Chr10	15348641	C-T	HET	INTRON
SBS	Chr10	3739753	A-G	HET	INTERGENIC
SBS	Chr10	8605251	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	9469208	T-C	HET	INTERGENIC
SBS	Chr11	8451532	C-T	HET	INTERGENIC
SBS	Chr12	15062485	C-G	HET	INTERGENIC
SBS	Chr12	15276021	G-C	HET	INTRON
SBS	Chr12	21028253	C-A	HET	INTERGENIC
SBS	Chr12	25123812	T-A	HOMO	INTERGENIC
SBS	Chr2	29779336	T-A	HET	INTERGENIC
SBS	Chr3	16851999	A-T	HOMO	INTRON
SBS	Chr3	20136911	C-T	HET	INTRON
SBS	Chr5	11644980	A-T	HET	INTERGENIC
SBS	Chr5	11644981	C-T	HET	INTERGENIC
SBS	Chr5	3231761	C-G	HOMO	INTRON
SBS	Chr6	1453600	C-A	HET	INTERGENIC
SBS	Chr6	14825406	C-A	HET	INTERGENIC
SBS	Chr6	25701969	T-C	HET	SYNONYMOUS_CODING
SBS	Chr6	25701977	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42730
SBS	Chr7	2358535	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05220
SBS	Chr7	5718351	C-T	HET	INTERGENIC
SBS	Chr7	6716371	C-T	HET	INTERGENIC
SBS	Chr8	18487653	C-G	HOMO	INTERGENIC
SBS	Chr8	22043197	C-T	HET	INTRON
SBS	Chr8	24714310	A-T	HOMO	STOP_GAINED	LOC_Os08g39120
SBS	Chr9	12854597	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	13604391	C-T	HET	INTERGENIC
SBS	Chr9	3265524	A-G	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	465001	938000	473000	90
Deletion	Chr5	1805318	1805320	2
Deletion	Chr6	2038793	2038803	10
Deletion	Chr9	2041086	2041096	10	LOC_Os09g03970
Deletion	Chr6	2969316	2969322	6
Deletion	Chr2	4865190	4865199	9
Deletion	Chr12	5010647	5010667	20
Deletion	Chr7	5017148	5017149	1
Deletion	Chr7	6194110	6194124	14	LOC_Os07g11240
Deletion	Chr9	6670068	6670089	21
Deletion	Chr6	8299499	8299500	1	LOC_Os06g14730
Deletion	Chr3	9165141	9165142	1
Deletion	Chr10	12093467	12093469	2
Deletion	Chr6	15308001	15382000	74000	7
Deletion	Chr2	15497000	15497015	15	LOC_Os02g26390
Deletion	Chr5	16541975	16541976	1	LOC_Os05g28250
Deletion	Chr1	18959454	18959462	8
Deletion	Chr4	20224267	20224268	1
Deletion	Chr2	20556227	20556234	7
Deletion	Chr11	27227127	27227128	1
Deletion	Chr12	27448285	27448300	15
Deletion	Chr6	27696430	27696433	3	LOC_Os06g45760

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	7822042	7822043	2
Insertion	Chr11	19576681	19576683	3
Insertion	Chr3	24695999	24695999	1
Insertion	Chr6	20948219	20948219	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6716611	6882638	LOC_Os07g12255

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	226868	Chr2	21806144
Translocation	Chr12	9725494	Chr9	13612938
Translocation	Chr8	12894810	Chr6	23394152
Translocation	Chr9	14377162	Chr2	32007609
Translocation	Chr4	15070039	Chr2	15004703
Translocation	Chr6	15382347	Chr1	32942414	2
Translocation	Chr6	15382466	Chr1	32942160	2
Translocation	Chr11	27773717	Chr6	8926387	LOC_Os06g15740

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