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Mutant Information

Mutant Name	FN888-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN888-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13617246	T-C	HET	INTERGENIC
SBS	Chr1	23966817	C-T	HET	INTERGENIC
SBS	Chr1	25369840	C-T	HOMO	INTRON
SBS	Chr1	30158156	A-T	HET	UTR_3_PRIME
SBS	Chr1	34392738	C-T	HOMO	INTERGENIC
SBS	Chr1	35933576	T-A	HET	INTERGENIC
SBS	Chr12	20268919	C-T	HOMO	INTERGENIC
SBS	Chr12	21716418	G-A	HOMO	INTERGENIC
SBS	Chr2	1926	C-T	HET	INTERGENIC
SBS	Chr2	2182042	C-T	HET	INTRON
SBS	Chr2	29681308	G-A	HET	INTERGENIC
SBS	Chr2	4338480	G-A	HET	INTERGENIC
SBS	Chr2	8047619	C-T	HET	INTRON
SBS	Chr3	14312802	G-A	HET	INTERGENIC
SBS	Chr3	15080629	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	20049954	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g33120
SBS	Chr4	29821272	C-A	HET	INTRON
SBS	Chr4	32913828	C-T	HET	INTERGENIC
SBS	Chr5	14272976	C-T	HET	INTERGENIC
SBS	Chr5	6475272	T-C	HET	INTRON
SBS	Chr5	6930604	T-A	HET	INTERGENIC
SBS	Chr6	12398707	C-T	HET	INTERGENIC
SBS	Chr6	26060753	T-C	HOMO	INTERGENIC
SBS	Chr6	5221447	C-T	HET	INTERGENIC
SBS	Chr7	19224138	T-C	HET	INTRON
SBS	Chr7	26750819	A-G	HET	INTERGENIC
SBS	Chr7	6012444	G-A	HET	INTERGENIC
SBS	Chr8	14760282	A-G	HET	INTERGENIC
SBS	Chr8	14760286	A-T	HET	UTR_3_PRIME
SBS	Chr8	25751145	C-T	HET	INTERGENIC
SBS	Chr9	18761587	A-G	HET	UTR_3_PRIME
SBS	Chr9	3690087	A-T	HET	INTERGENIC
SBS	Chr9	4763486	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08960
SBS	Chr9	8298038	C-T	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	5557186	5557187	1
Deletion	Chr5	6475279	6475280	1
Deletion	Chr6	7263846	7263866	20	LOC_Os06g13220
Deletion	Chr12	9559001	9765000	206000	36
Deletion	Chr12	11261981	11261982	1
Deletion	Chr7	12641224	12643134	1910	LOC_Os07g22480
Deletion	Chr4	12856595	12856601	6
Deletion	Chr9	14889169	14889170	1
Deletion	Chr7	15220279	15220280	1
Deletion	Chr6	15888336	15888348	12
Deletion	Chr12	17039006	17039007	1
Deletion	Chr4	18709100	18709121	21
Deletion	Chr11	22331001	22525000	194000	26
Deletion	Chr11	22530001	22777000	247000	44
Deletion	Chr1	23181492	23181499	7
Deletion	Chr2	25438330	25446863	8533	2
Deletion	Chr6	26063306	26063311	5

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	25824153	25824154	2

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	285140	710134	LOC_Os03g01390
Inversion	Chr3	285151	710141	LOC_Os03g01390
Inversion	Chr5	768277	1422917	LOC_Os05g03420
Inversion	Chr5	768289	1422918	LOC_Os05g03420
Inversion	Chr4	4394297	4890945
Inversion	Chr4	4396605	4890953
Inversion	Chr9	5950040	6390299
Inversion	Chr9	5950056	6390297
Inversion	Chr12	9559203	9663380	LOC_Os12g16850
Inversion	Chr7	24415296	24670743	LOC_Os07g40730

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11115536	Chr3	29243983
Translocation	Chr5	21491621	Chr4	4503560	2
Translocation	Chr2	25438367	Chr1	20774774	LOC_Os02g42300
Translocation	Chr2	25446831	Chr1	20774798	LOC_Os02g42310

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