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Mutant Information

Mutant Name	W577-3-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W577-3-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21736103	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g38700
SBS	Chr10	17241297	T-C	HOMO	INTERGENIC
SBS	Chr11	11641437	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g20150
SBS	Chr11	21188575	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	23751434	G-A	HOMO	INTERGENIC
SBS	Chr12	4652104	G-T	HET	INTERGENIC
SBS	Chr2	13163158	G-T	HET	INTRON
SBS	Chr2	17705915	C-T	HET	INTRON
SBS	Chr4	3561243	G-A	HET	INTRON
SBS	Chr4	3561244	C-A	HET	INTRON
SBS	Chr4	3561245	A-T	HET	INTRON
SBS	Chr4	8537220	G-A	HET	INTERGENIC
SBS	Chr6	15259011	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g26070
SBS	Chr6	17453940	C-A	HOMO	INTERGENIC
SBS	Chr6	18115134	C-G	HOMO	INTERGENIC
SBS	Chr6	7098783	C-T	HET	INTRON
SBS	Chr7	11280632	G-A	HET	UTR_3_PRIME
SBS	Chr7	12492885	A-G	HET	INTERGENIC
SBS	Chr7	20454977	G-A	HET	INTERGENIC
SBS	Chr7	3742117	T-A	HOMO	INTERGENIC
SBS	Chr9	11830629	G-C	HOMO	INTERGENIC
SBS	Chr9	4529868	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08650

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1088631	1088632	1
Deletion	Chr10	1322137	1329892	7755	2
Deletion	Chr7	2557858	2557863	5
Deletion	Chr6	2913160	2913163	3
Deletion	Chr7	4360220	4360223	3
Deletion	Chr3	4377274	4377282	8
Deletion	Chr5	4499291	4499298	7
Deletion	Chr2	5578661	5578662	1
Deletion	Chr2	5810643	5810644	1
Deletion	Chr2	5835953	5835954	1
Deletion	Chr5	6746001	7028000	282000	42
Deletion	Chr12	9159271	9159276	5
Deletion	Chr4	12148012	12148013	1	LOC_Os04g21480
Deletion	Chr6	14302889	14302897	8
Deletion	Chr11	14614126	14614127	1
Deletion	Chr9	15966558	15966576	18
Deletion	Chr4	17429948	17429949	1
Deletion	Chr1	19154982	19154991	9
Deletion	Chr6	21686060	21686061	1
Deletion	Chr11	22721757	22721758	1
Deletion	Chr5	23115413	23115420	7
Deletion	Chr5	23274260	23274261	1
Deletion	Chr8	25258142	25258143	1
Deletion	Chr8	25584484	25584492	8
Deletion	Chr1	25601689	25601691	2
Deletion	Chr11	26640715	26640717	2
Deletion	Chr1	26809177	26809178	1
Deletion	Chr5	29074293	29074294	1
Deletion	Chr6	30840902	30840910	8
Deletion	Chr2	33749244	33750159	915
Deletion	Chr4	34660574	34660582	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21109752	21109752	1
Insertion	Chr2	19638197	19638197	1
Insertion	Chr2	24120906	24120907	2
Insertion	Chr3	3312217	3312217	1
Insertion	Chr4	20326665	20326665	1
Insertion	Chr8	19998614	19998614	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6422048	7027702	LOC_Os05g11370
Inversion	Chr6	6667784	7007400	LOC_Os06g12820
Inversion	Chr6	6667795	7007398	LOC_Os06g12820

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1322143	Chr4	15303738	LOC_Os10g03130

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